Ricard Illa
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/nucleR |
| Branch: RELEASE_3_7 |
| Last Commit: 8357444 |
| Last Changed Date: 2018-07-05 15:28:34 -0400 (Thu, 05 Jul 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:35:33 -0400 (Wed, 17 Oct 2018).
| Package 1005/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| nucleR 2.12.1 Ricard Illa
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: nucleR |
| Version: 2.12.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/nucleR_2.12.1.tar.gz && rm -rf nucleR.buildbin-libdir && mkdir nucleR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nucleR.buildbin-libdir nucleR_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL nucleR_2.12.1.zip && rm nucleR_2.12.1.tar.gz nucleR_2.12.1.zip |
| StartedAt: 2018-10-16 19:40:24 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:41:26 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 61.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/nucleR_2.12.1.tar.gz && rm -rf nucleR.buildbin-libdir && mkdir nucleR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nucleR.buildbin-libdir nucleR_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL nucleR_2.12.1.zip && rm nucleR_2.12.1.tar.gz nucleR_2.12.1.zip
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install for i386
* installing *source* package 'nucleR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'nucleR'
finding HTML links ... done
controlCorrection html
coverage.rpm html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/coverage.rpm.Rd:35: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/coverage.rpm.Rd:36: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/coverage.rpm.Rd:23: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/coverage.rpm.Rd:23: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/coverage.rpm.Rd:52: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
export.bed html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/export.bed.Rd:28: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/export.bed.Rd:29: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/export.bed.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
export.wig html
filterFFT html
fragmentLenDetect html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/fragmentLenDetect.Rd:27: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
mergeCalls html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/mergeCalls.Rd:16: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/mergeCalls.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
nucleR-package html
nucleosome_htseq html
nucleosome_tiling html
pcKeepCompDetect html
peakDetection html
peakScoring html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/peakScoring.Rd:63: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
plotPeaks html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/plotPeaks.Rd:67: file link 'geom_rect' in package 'ggplot2' does not exist and so has been treated as a topic
processReads html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/processReads.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/processReads.Rd:54: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/processReads.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/processReads.Rd:114: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
processTilingArray html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/processTilingArray.Rd:123: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
readBAM html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/readBAM.Rd:16: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
readBowtie html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyUZHI4/R.INSTALL1fa0655de90/nucleR/man/readBowtie.Rd:16: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
syntheticNucMap html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'nucleR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nucleR' as nucleR_2.12.1.zip
* DONE (nucleR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'nucleR' successfully unpacked and MD5 sums checked
In R CMD INSTALL