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This page was generated on 2018-07-17 11:13:23 -0400 (Tue, 17 Jul 2018).
Package 946/1560 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
mQTL.NMR 1.14.0 Lyamine Hedjazi
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: mQTL.NMR |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:mQTL.NMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings mQTL.NMR_1.14.0.tar.gz |
StartedAt: 2018-07-17 01:00:16 -0400 (Tue, 17 Jul 2018) |
EndedAt: 2018-07-17 01:04:12 -0400 (Tue, 17 Jul 2018) |
EllapsedTime: 235.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mQTL.NMR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:mQTL.NMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings mQTL.NMR_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/mQTL.NMR.Rcheck’ * using R version 3.5.0 (2018-04-23) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mQTL.NMR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mQTL.NMR’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mQTL.NMR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Found the following CITATION file in a non-standard place: inst/CITATION.Rd Most likely ‘inst/CITATION’ should be used instead. * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE circle_mQTL: no visible global function definition for ‘rainbow’ post_mQTL: no visible global function definition for ‘dev.new’ post_mQTL: no visible global function definition for ‘png’ post_mQTL: no visible global function definition for ‘dev.off’ ppersp: no visible global function definition for ‘colorRampPalette’ Undefined global functions or variables: colorRampPalette dev.new dev.off png rainbow Consider adding importFrom("grDevices", "colorRampPalette", "dev.new", "dev.off", "png", "rainbow") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed mQTL.NMR-package 58.545 0.353 59.255 pre_mQTL 58.548 0.257 59.234 align_mQTL 51.663 0.318 52.320 process_mGWA 7.053 0.026 7.129 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.7-bioc/meat/mQTL.NMR.Rcheck/00check.log’ for details.
mQTL.NMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL mQTL.NMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘mQTL.NMR’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (mQTL.NMR)
mQTL.NMR.Rcheck/mQTL.NMR-Ex.timings
name | user | system | elapsed | |
SRV | 2.133 | 0.043 | 2.185 | |
SRV.plot | 1.836 | 0.045 | 1.895 | |
SRV_lod.plot | 0.135 | 0.002 | 0.143 | |
Top_SRV.plot | 1.617 | 0.026 | 1.654 | |
alignSp | 1.030 | 0.024 | 1.058 | |
align_mQTL | 51.663 | 0.318 | 52.320 | |
attachSegments | 0.714 | 0.010 | 0.728 | |
circle_mQTL | 0.143 | 0.001 | 0.146 | |
configureRSPA | 0.008 | 0.001 | 0.009 | |
format_mGWA | 0.578 | 0.013 | 0.603 | |
format_mQTL | 0.897 | 0.015 | 0.920 | |
load_datafiles | 0.005 | 0.001 | 0.005 | |
load_demo_data | 0.001 | 0.000 | 0.001 | |
mQTL.NMR-package | 58.545 | 0.353 | 59.255 | |
matchSegments | 0.818 | 0.013 | 0.837 | |
normalise | 0.507 | 0.007 | 0.520 | |
normalise_mQTL | 2.487 | 0.051 | 2.565 | |
peakPeaks | 0.330 | 0.004 | 0.334 | |
post_mQTL | 0.429 | 0.041 | 0.484 | |
ppersp | 0.032 | 0.007 | 0.039 | |
pplot | 0.023 | 0.009 | 0.031 | |
pre_mQTL | 58.548 | 0.257 | 59.234 | |
process_mGWA | 7.053 | 0.026 | 7.129 | |
process_mQTL | 0.743 | 0.018 | 0.767 | |
segmentateSp | 0.737 | 0.014 | 0.755 | |
selectRefSp | 1.841 | 0.005 | 1.856 | |
setupRSPA | 0.008 | 0.001 | 0.009 | |
sgolay | 0.002 | 0.000 | 0.001 | |
sgolayDeriv | 0.145 | 0.001 | 0.147 | |
simple.plot | 1.546 | 0.025 | 1.586 | |
summary_mQTL | 0.020 | 0.002 | 0.022 | |