Gordon Smyth
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/limmaGUI |
| Branch: RELEASE_3_7 |
| Last Commit: 31ebf8f |
| Last Changed Date: 2018-05-02 20:59:18 -0400 (Wed, 02 May 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:32:08 -0400 (Wed, 17 Oct 2018).
| Package 787/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| limmaGUI 1.56.1 Gordon Smyth
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: limmaGUI |
| Version: 1.56.1 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:limmaGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings limmaGUI_1.56.1.tar.gz |
| StartedAt: 2018-10-17 02:57:20 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 02:58:21 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 60.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: limmaGUI.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:limmaGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings limmaGUI_1.56.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/limmaGUI.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'limmaGUI/DESCRIPTION' ... OK
* this is package 'limmaGUI' version '1.56.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'limmaGUI' can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.7Mb
sub-directories of 1Mb or more:
doc 6.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AboutNormalization: no visible binding for global variable
'.limmaGUIglobals'
ChooseContrastsParameterization: no visible binding for global variable
'limmaGUIenvironment'
ChooseContrastsParameterization: no visible binding for global variable
'ParameterizationNamesVec'
ChooseContrastsParameterization: no visible binding for global variable
'parameterizationIndex'
ChooseContrastsParameterization: no visible binding for global variable
'.limmaGUIglobals'
ChooseContrastsParameterization : onOK: no visible binding for global
variable '.limmaGUIglobals'
ChooseContrastsParameterization : onCancel: no visible binding for
global variable '.limmaGUIglobals'
ChooseContrastsParameterization : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
ChooseEbayesStatistic: no visible binding for global variable
'.limmaGUIglobals'
ChooseEbayesStatistic : onOK: no visible binding for global variable
'.limmaGUIglobals'
ChooseEbayesStatistic : onCancel: no visible binding for global
variable '.limmaGUIglobals'
ChooseEbayesStatistic : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
ChooseParameterization: no visible binding for global variable
'limmaGUIenvironment'
ChooseParameterization: no visible binding for global variable
'.limmaGUIglobals'
ChooseParameterization : onOK: no visible binding for global variable
'.limmaGUIglobals'
ChooseParameterization : onCancel: no visible binding for global
variable '.limmaGUIglobals'
ChooseParameterization : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
ChoosePlotSymbolByClicking: no visible binding for global variable
'.limmaGUIglobals'
ChoosePlotSymbolByClicking : LeftClick: no visible binding for global
variable '.limmaGUIglobals'
ChoosePlotSymbolByClicking : onCancel: no visible binding for global
variable '.limmaGUIglobals'
ChoosePlotSymbolByClicking : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
ChooseSpotType: no visible binding for global variable
'.limmaGUIglobals'
ChooseSpotType : onOK: no visible binding for global variable
'.limmaGUIglobals'
ChooseSpotType : onCancel: no visible binding for global variable
'.limmaGUIglobals'
ChooseSpotType : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
ComputeContrasts: no visible binding for global variable
'limmaGUIenvironment'
ComputeContrasts: no visible binding for global variable
'.limmaGUIglobals'
ComputeLinearModelFit: no visible binding for global variable
'limmaGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
'.limmaGUIglobals'
ComputeLinearModelFit : GetDupCor: no visible binding for global
variable '.limmaGUIglobals'
ComputeLinearModelFit : GetDupCor : onOK: no visible binding for global
variable '.limmaGUIglobals'
ComputeLinearModelFit : GetDupCor : onCancel: no visible binding for
global variable '.limmaGUIglobals'
ComputeLinearModelFit : GetDupCor : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
CreateNewParameterization: no visible binding for global variable
'limmaGUIenvironment'
CreateNewParameterization: no visible binding for global variable
'.limmaGUIglobals'
CreateTreeAndList: no visible binding for global variable
'limmaGUIenvironment'
CreateTreeAndList: no visible binding for global variable
'.limmaGUIglobals'
DeleteContrastsParameterization: no visible binding for global variable
'limmaGUIenvironment'
DeleteContrastsParameterization: no visible binding for global variable
'.limmaGUIglobals'
DeleteParameterization: no visible binding for global variable
'limmaGUIenvironment'
DeleteParameterization: no visible binding for global variable
'.limmaGUIglobals'
DupCorBoxPlot: no visible binding for global variable
'limmaGUIenvironment'
DupCorBoxPlot: no visible binding for global variable
'.limmaGUIglobals'
ExportAvalues: no visible binding for global variable
'limmaGUIenvironment'
ExportHTMLreport: no visible binding for global variable
'limmaGUIenvironment'
ExportHTMLreport: no visible binding for global variable
'.limmaGUIglobals'
ExportMvalues: no visible binding for global variable
'limmaGUIenvironment'
GetBackgroundCorrectionMethod: no visible binding for global variable
'.limmaGUIglobals'
GetBackgroundCorrectionMethod: no visible binding for global variable
'limmaGUIenvironment'
GetBackgroundCorrectionMethod : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetBackgroundCorrectionMethod : onOK: no visible binding for global
variable 'limmaGUIenvironment'
GetBackgroundCorrectionMethod : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
GetBetweenArrayNormalizationMethod: no visible binding for global
variable '.limmaGUIglobals'
GetBetweenArrayNormalizationMethod: no visible binding for global
variable 'limmaGUIenvironment'
GetBetweenArrayNormalizationMethod : onOK: no visible binding for
global variable 'limmaGUIenvironment'
GetBetweenArrayNormalizationMethod : onOK: no visible binding for
global variable '.limmaGUIglobals'
GetBetweenArrayNormalizationMethod : <anonymous>: no visible binding
for global variable '.limmaGUIglobals'
GetCoef: no visible binding for global variable 'limmaGUIenvironment'
GetCoef: no visible binding for global variable '.limmaGUIglobals'
GetCoef : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetCoef : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetCoef : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetComponentsToExportInHTMLreport: no visible binding for global
variable 'limmaGUIenvironment'
GetComponentsToExportInHTMLreport: no visible binding for global
variable '.limmaGUIglobals'
GetComponentsToExportInHTMLreport : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetComponentsToExportInHTMLreport : onCancel: no visible binding for
global variable '.limmaGUIglobals'
GetComponentsToExportInHTMLreport : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
GetContrastsParameterizationName: no visible binding for global
variable '.limmaGUIglobals'
GetContrastsParameterizationName : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetContrastsParameterizationName : onCancel: no visible binding for
global variable '.limmaGUIglobals'
GetContrastsParameterizationName : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
GetContrastsParameterizationNames: no visible binding for global
variable 'limmaGUIenvironment'
GetDEcutoff: no visible binding for global variable '.limmaGUIglobals'
GetDEcutoff : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetDEcutoff : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetDEcutoff : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetDesignOrContrasts: no visible binding for global variable
'limmaGUIenvironment'
GetDesignOrContrasts: no visible binding for global variable
'.limmaGUIglobals'
GetDesignOrContrasts : GetDesignOrContrastsTable: no visible binding
for global variable '.limmaGUIglobals'
GetDesignOrContrasts : GetDesignOrContrastsTable : onOK: no visible
binding for global variable 'limmaGUIenvironment'
GetDesignOrContrasts : GetDesignOrContrastsTable : onOK: no visible
binding for global variable '.limmaGUIglobals'
GetDesignOrContrasts : GetDesignOrContrastsTable : onCancel: no visible
binding for global variable '.limmaGUIglobals'
GetDesignOrContrasts : GetDesignOrContrastsTable : <anonymous>: no
visible binding for global variable '.limmaGUIglobals'
GetDesignOrContrasts : OnAdvanced: no visible binding for global
variable 'limmaGUIenvironment'
GetDesignOrContrasts : OnAdvanced: no visible binding for global
variable '.limmaGUIglobals'
GetDesignOrContrasts : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetDesignOrContrasts : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetDesignOrContrasts : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetGeneLabelsOptions: no visible binding for global variable
'.limmaGUIglobals'
GetGeneLabelsOptions : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetGeneLabelsOptions : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetGeneLabelsOptions : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetGenePixFlagWeightings: no visible binding for global variable
'.limmaGUIglobals'
GetGenePixFlagWeightings : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetGenePixFlagWeightings : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetGenePixFlagWeightings : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetImageAnalysisColumnHeadings: no visible binding for global variable
'.limmaGUIglobals'
GetImageAnalysisColumnHeadings : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetImageAnalysisColumnHeadings : onCancel: no visible binding for
global variable '.limmaGUIglobals'
GetImageAnalysisColumnHeadings : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
GetImageProcessingFileType: no visible binding for global variable
'.limmaGUIglobals'
GetImageProcessingFileType: no visible binding for global variable
'limmaGUIenvironment'
GetImageProcessingFileType : onOther: no visible binding for global
variable '.limmaGUIglobals'
GetImageProcessingFileType : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetImageProcessingFileType : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetImageProcessingFileType : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetJpegOrPngParams: no visible binding for global variable
'.limmaGUIglobals'
GetJpegOrPngParams : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetJpegOrPngParams : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetJpegOrPngParams : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetJpegOrPngX11Params: no visible binding for global variable
'.limmaGUIglobals'
GetJpegOrPngX11Params : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetJpegOrPngX11Params : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetJpegOrPngX11Params : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetLowessType: no visible binding for global variable
'.limmaGUIglobals'
GetLowessType : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetLowessType : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetNEWxlim: no visible binding for global variable '.limmaGUIglobals'
GetNEWxlim : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetNEWxlim : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetNEWxlim : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetNormexpOffsetValue: no visible binding for global variable
'.limmaGUIglobals'
GetNormexpOffsetValue : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetNormexpOffsetValue : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetNormexpOffsetValue : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetNumParametersNoTargets: no visible binding for global variable
'limmaGUIenvironment'
GetNumParametersNoTargets: no visible binding for global variable
'.limmaGUIglobals'
GetNumParametersNoTargets : onOK: no visible binding for global
variable 'limmaGUIenvironment'
GetNumParametersNoTargets : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetNumParametersNoTargets : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetNumParametersNoTargets : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetPValueCutoff: no visible binding for global variable
'.limmaGUIglobals'
GetPValueCutoff : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetPValueCutoff : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetPValueCutoff : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetParameterNames: no visible binding for global variable
'limmaGUIenvironment'
GetParameterizationName: no visible binding for global variable
'.limmaGUIglobals'
GetParameterizationName : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetParameterizationName : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetParameterizationName : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetParametersAndOrContrasts: no visible binding for global variable
'limmaGUIenvironment'
GetParametersAndOrContrasts: no visible binding for global variable
'.limmaGUIglobals'
GetParametersAndOrContrasts : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetParametersAndOrContrasts : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetParametersAndOrContrasts : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
GetPlotLabels: no visible binding for global variable
'.limmaGUIglobals'
GetPlotLabels : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetPlotLabels : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetPlotLabels : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetPlotSize: no visible binding for global variable '.limmaGUIglobals'
GetPlotSize : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetPlotSize : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetPlotSize : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetPlotTitle: no visible binding for global variable '.limmaGUIglobals'
GetPlotTitle : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetPlotTitle : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetPlotTitle : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetReducedDuplicateSpacing: no visible binding for global variable
'limmaGUIenvironment'
GetSlideNum: no visible binding for global variable
'limmaGUIenvironment'
GetSlideNum: no visible binding for global variable '.limmaGUIglobals'
GetSlideNum : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetSlideNum : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetSlideNum : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetSpotTypesForLinearModel: no visible binding for global variable
'limmaGUIenvironment'
GetSpotTypesForLinearModel: no visible binding for global variable
'.limmaGUIglobals'
GetSpotTypesForLinearModel : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetSpotTypesForLinearModel : onCancel: no visible binding for global
variable '.limmaGUIglobals'
GetSpotTypesForLinearModel : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetSpotTypesIncludedNames: no visible binding for global variable
'limmaGUIenvironment'
GetWithinArrayNormalizationMethod: no visible binding for global
variable '.limmaGUIglobals'
GetWithinArrayNormalizationMethod: no visible binding for global
variable 'limmaGUIenvironment'
GetWithinArrayNormalizationMethod : onOK: no visible binding for global
variable 'limmaGUIenvironment'
GetWithinArrayNormalizationMethod : onOK: no visible binding for global
variable '.limmaGUIglobals'
GetWithinArrayNormalizationMethod : <anonymous>: no visible binding for
global variable '.limmaGUIglobals'
GetWtAreaParams: no visible binding for global variable
'.limmaGUIglobals'
GetWtAreaParams : onOK: no visible binding for global variable
'limmaGUIenvironment'
GetWtAreaParams : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetWtAreaParams : onCancel: no visible binding for global variable
'.limmaGUIglobals'
GetWtAreaParams : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
GetlimmaDataSetName: no visible binding for global variable
'limmaGUIenvironment'
GetlimmaDataSetName: no visible binding for global variable
'.limmaGUIglobals'
GetlimmaDataSetName : onOK: no visible binding for global variable
'limmaGUIenvironment'
GetlimmaDataSetName : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
GetlmFitMethod: no visible binding for global variable
'.limmaGUIglobals'
GetlmFitMethod: no visible binding for global variable
'limmaGUIenvironment'
GetlmFitMethod : onOK: no visible binding for global variable
'limmaGUIenvironment'
GetlmFitMethod : onOK: no visible binding for global variable
'.limmaGUIglobals'
GetlmFitMethod : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
HTMLplotUsingFunction: no visible binding for global variable
'.HTML.file'
HTMLplotUsingFunction: no visible binding for global variable 'gif'
HeatDiagramDialog: no visible binding for global variable
'.limmaGUIglobals'
HeatDiagramDialog : onOK: no visible binding for global variable
'.limmaGUIglobals'
HeatDiagramDialog : onCancel: no visible binding for global variable
'.limmaGUIglobals'
HeatDiagramDialog : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
HeatDiagramPlot: no visible binding for global variable
'limmaGUIenvironment'
HeatDiagramPlot: no visible binding for global variable
'.limmaGUIglobals'
HowManyDups: no visible binding for global variable
'limmaGUIenvironment'
HowManyDups: no visible binding for global variable '.limmaGUIglobals'
HowManyDups : onOK: no visible binding for global variable
'limmaGUIenvironment'
HowManyDups : onOK: no visible binding for global variable
'.limmaGUIglobals'
HowManyDups : onCancel: no visible binding for global variable
'.limmaGUIglobals'
HowManyDups : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
ImageArrayPlot: no visible binding for global variable
'limmaGUIenvironment'
ImageArrayPlot: no visible binding for global variable
'.limmaGUIglobals'
ImageArrayPlotDialog: no visible binding for global variable
'limmaGUIenvironment'
ImageArrayPlotDialog: no visible binding for global variable
'.limmaGUIglobals'
ImageArrayPlotDialog : onOK: no visible binding for global variable
'.limmaGUIglobals'
ImageArrayPlotDialog : onCancel: no visible binding for global variable
'.limmaGUIglobals'
ImageArrayPlotDialog : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
ImportMA: no visible binding for global variable 'limmaGUIenvironment'
ImportMA: no visible binding for global variable '.limmaGUIglobals'
ImportMADialog: no visible binding for global variable
'.limmaGUIglobals'
ImportMADialog : onOK: no visible binding for global variable
'.limmaGUIglobals'
ImportMADialog : onCancel: no visible binding for global variable
'.limmaGUIglobals'
ImportMADialog : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
InitNewParameterization: no visible binding for global variable
'limmaGUIenvironment'
InitNewParameterization: no visible binding for global variable
'.limmaGUIglobals'
LogOddsPlot: no visible binding for global variable
'limmaGUIenvironment'
LogOddsPlot: no visible binding for global variable '.limmaGUIglobals'
MAPlot: no visible binding for global variable 'limmaGUIenvironment'
MAPlot: no visible binding for global variable '.limmaGUIglobals'
MAPlotAvg: no visible binding for global variable 'limmaGUIenvironment'
MAPlotAvg: no visible binding for global variable '.limmaGUIglobals'
MAPlotAvg : plotAvgMA: no visible binding for global variable
'limmaGUIenvironment'
MBoxPlot: no visible binding for global variable 'limmaGUIenvironment'
MBoxPlot: no visible binding for global variable '.limmaGUIglobals'
MMPlot: no visible binding for global variable 'limmaGUIenvironment'
MMPlot: no visible binding for global variable '.limmaGUIglobals'
NewLimmaFile: no visible binding for global variable
'limmaGUIenvironment'
NormalizeNow: no visible binding for global variable
'limmaGUIenvironment'
NormalizeNow: no visible binding for global variable '.limmaGUIglobals'
OpenALimmaFile: no visible binding for global variable
'limmaGUIenvironment'
OpenGALFile: no visible binding for global variable
'limmaGUIenvironment'
OpenGALandTargetsandSpotTypesfiles : onOK: no visible binding for
global variable 'limmaGUIenvironment'
OpenSpotTypesFile: no visible binding for global variable
'limmaGUIenvironment'
OpenTargetsFile: no visible binding for global variable
'limmaGUIenvironment'
PlotOptions: no visible binding for global variable '.limmaGUIglobals'
PlotOptions : onOK: no visible binding for global variable
'.limmaGUIglobals'
PlotOptions : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
PrintTipGroupMAPlot: no visible binding for global variable
'limmaGUIenvironment'
PrintTipGroupMAPlot: no visible binding for global variable
'.limmaGUIglobals'
QQTplot: no visible binding for global variable 'limmaGUIenvironment'
QQTplot: no visible binding for global variable '.limmaGUIglobals'
ReadImageProcessingFiles: no visible binding for global variable
'limmaGUIenvironment'
ReadImageProcessingFiles: no visible binding for global variable
'.limmaGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
'limmaGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
'.limmaGUIglobals'
SaveLimmaFile: no visible binding for global variable
'limmaGUIenvironment'
SaveLimmaFile: no visible binding for global variable
'.limmaGUIglobals'
SelectPlotSymbols: no visible binding for global variable
'.limmaGUIglobals'
SelectPlotSymbols : onBrowse: no visible binding for global variable
'.limmaGUIglobals'
SelectPlotSymbols : onOK: no visible binding for global variable
'.limmaGUIglobals'
SelectPlotSymbols : onCancel: no visible binding for global variable
'.limmaGUIglobals'
SelectPlotSymbols : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
SetLayoutParameters: no visible binding for global variable
'limmaGUIenvironment'
SetLayoutParameters: no visible binding for global variable
'.limmaGUIglobals'
SetLayoutParameters : GetFromGAL: no visible binding for global
variable 'limmaGUIenvironment'
SetLayoutParameters : onOK: no visible binding for global variable
'limmaGUIenvironment'
SetLayoutParameters : onOK: no visible binding for global variable
'.limmaGUIglobals'
SetLayoutParameters : onCancel: no visible binding for global variable
'.limmaGUIglobals'
SetLayoutParameters : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
SetWD: no visible binding for global variable '.limmaGUIglobals'
TclRequire: no visible binding for global variable '.limmaGUIglobals'
TclRequire : onDestroy: no visible binding for global variable
'.limmaGUIglobals'
TclRequire : onOK: no visible binding for global variable
'.limmaGUIglobals'
TclRequire : onOK: no visible binding for global variable
'limmaGUIenvironment'
UpDownOrBoth: no visible binding for global variable '.limmaGUIglobals'
UpDownOrBoth : onOK: no visible binding for global variable
'.limmaGUIglobals'
UpDownOrBoth : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
UpdateSpotTypesStatus: no visible binding for global variable
'limmaGUIenvironment'
VennDiagramPlot: no visible binding for global variable
'limmaGUIenvironment'
VennDiagramPlot: no visible binding for global variable
'.limmaGUIglobals'
ViewDesignOrContrastsMatrixAsPairs: no visible binding for global
variable 'limmaGUIenvironment'
ViewDesignOrContrastsMatrixAsPairs: no visible binding for global
variable '.limmaGUIglobals'
ViewDesignOrContrastsMatrixAsPairs : onOK: no visible binding for
global variable '.limmaGUIglobals'
ViewDesignOrContrastsMatrixAsPairs : <anonymous>: no visible binding
for global variable '.limmaGUIglobals'
ViewDesignOrContrastsMatrixInTable: no visible binding for global
variable 'limmaGUIenvironment'
ViewDesignOrContrastsMatrixInTable: no visible binding for global
variable '.limmaGUIglobals'
ViewDesignOrContrastsMatrixInTable : onClose: no visible binding for
global variable '.limmaGUIglobals'
ViewDesignOrContrastsMatrixInTable : <anonymous>: no visible binding
for global variable '.limmaGUIglobals'
ViewExistingContrastsParameterization: no visible binding for global
variable 'limmaGUIenvironment'
ViewExistingContrastsParameterization: no visible binding for global
variable '.limmaGUIglobals'
ViewExistingParameterization: no visible binding for global variable
'limmaGUIenvironment'
ViewExistingParameterization: no visible binding for global variable
'.limmaGUIglobals'
ViewRNATargets: no visible binding for global variable
'limmaGUIenvironment'
ViewRNATargets: no visible binding for global variable
'.limmaGUIglobals'
ViewRNATargets : onClose: no visible binding for global variable
'.limmaGUIglobals'
ViewRNATargets : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
ViewSpotTypes: no visible binding for global variable
'limmaGUIenvironment'
ViewSpotTypes: no visible binding for global variable
'.limmaGUIglobals'
ViewSpotTypes : onUpdate: no visible binding for global variable
'limmaGUIenvironment'
ViewSpotTypes : onUpdate: no visible binding for global variable
'.limmaGUIglobals'
ViewSpotTypes : onClose: no visible binding for global variable
'.limmaGUIglobals'
ViewSpotTypes : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
WithinBetweenOrBoth: no visible binding for global variable
'.limmaGUIglobals'
WithinBetweenOrBoth : onOK: no visible binding for global variable
'.limmaGUIglobals'
WithinBetweenOrBoth : <anonymous>: no visible binding for global
variable '.limmaGUIglobals'
chooseDir: no visible binding for global variable '.limmaGUIglobals'
ebayesBoxPlots: no visible binding for global variable
'limmaGUIenvironment'
ebayesBoxPlots: no visible binding for global variable
'.limmaGUIglobals'
ebayesBoxPlots: no visible binding for global variable
'limmaDataSetNameText'
evalRcode: no visible binding for global variable '.limmaGUIglobals'
evalRcode : runOverall: no visible binding for global variable
'.limmaGUIglobals'
evalRcode : runOverall: no visible binding for global variable
'limmaGUIenvironment'
initGlobals: no visible binding for global variable
'limmaGUIenvironment'
initGlobals: no visible binding for '<<-' assignment to
'NEOffsetDefault'
initGlobals: no visible binding for global variable 'NEOffsetDefault'
limmaGUI: no visible binding for global variable 'limmaGUIenvironment'
limmaGUI: no visible binding for global variable '.limmaGUIglobals'
limmaGUI : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
onDestroy: no visible binding for global variable 'limmaGUIenvironment'
onExit: no visible binding for global variable 'limmaGUIenvironment'
onExit: no visible binding for global variable '.limmaGUIglobals'
plotMAColorCoded: no visible binding for global variable
'limmaGUIenvironment'
plotMAColorCoded: no visible binding for global variable
'.limmaGUIglobals'
showGAL: no visible binding for global variable 'limmaGUIenvironment'
showGAL: no visible binding for global variable '.limmaGUIglobals'
showTopTable: no visible binding for global variable
'limmaGUIenvironment'
showTopTable: no visible binding for global variable '.limmaGUIglobals'
showTopTable : onOK: no visible binding for global variable
'.limmaGUIglobals'
showTopTable : onCancel: no visible binding for global variable
'.limmaGUIglobals'
showTopTable : <anonymous>: no visible binding for global variable
'.limmaGUIglobals'
Undefined global functions or variables:
.HTML.file .limmaGUIglobals NEOffsetDefault ParameterizationNamesVec
gif limmaDataSetNameText limmaGUIenvironment parameterizationIndex
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/limmaGUI.Rcheck/00check.log'
for details.
limmaGUI.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/limmaGUI_1.56.1.tar.gz && rm -rf limmaGUI.buildbin-libdir && mkdir limmaGUI.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=limmaGUI.buildbin-libdir limmaGUI_1.56.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL limmaGUI_1.56.1.zip && rm limmaGUI_1.56.1.tar.gz limmaGUI_1.56.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
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100 5317k 100 5317k 0 0 51.6M 0 --:--:-- --:--:-- --:--:-- 55.2M
install for i386
* installing *source* package 'limmaGUI' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'limmaGUI'
finding HTML links ... done
LGchangelog html
limmaGUI html
** building package indices
** installing vignettes
'extract.Rnw'
'limmaGUI.Rnw'
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'limmaGUI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'limmaGUI' as limmaGUI_1.56.1.zip
* DONE (limmaGUI)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'limmaGUI' successfully unpacked and MD5 sums checked
In R CMD INSTALL