Paul Shannon
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/igvR |
| Branch: RELEASE_3_7 |
| Last Commit: 4c763f0 |
| Last Changed Date: 2018-06-30 18:53:16 -0400 (Sat, 30 Jun 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 09:00:02 -0400 (Wed, 17 Oct 2018).
| Package 721/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| igvR 1.0.1 Paul Shannon
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: igvR |
| Version: 1.0.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:igvR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings igvR_1.0.1.tar.gz |
| StartedAt: 2018-10-16 22:03:51 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 22:07:41 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 229.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: igvR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:igvR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings igvR_1.0.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/igvR.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘igvR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘igvR’ version ‘1.0.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘igvR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
igvR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL igvR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘igvR’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (igvR)
igvR.Rcheck/igvR-Ex.timings
| name | user | system | elapsed | |
| DataFrameAnnotationTrack-class | 0.016 | 0.001 | 0.020 | |
| DataFrameQuantitativeTrack-class | 0.013 | 0.000 | 0.013 | |
| GRangesAnnotationTrack-class | 0.083 | 0.000 | 0.083 | |
| GRangesQuantitativeTrack-class | 0.029 | 0.000 | 0.029 | |
| UCSCBedAnnotationTrack-class | 0.398 | 0.038 | 0.443 | |
| UCSCBedGraphQuantitativeTrack-class | 0.156 | 0.021 | 0.181 | |
| VariantTrack-class | 0.755 | 0.089 | 0.856 | |
| displayTrack | 0.005 | 0.000 | 0.006 | |
| getGenomicRegion | 0.003 | 0.000 | 0.003 | |
| getTrackNames | 0.001 | 0.000 | 0.002 | |
| igvR-class | 0.006 | 0.000 | 0.009 | |
| ping | 0.001 | 0.000 | 0.002 | |
| removeTracksByName | 0.006 | 0.001 | 0.006 | |
| setGenome | 0.001 | 0.000 | 0.002 | |
| showGenomicRegion | 0.002 | 0.000 | 0.003 | |
| trackInfo | 0.003 | 0.000 | 0.003 | |
| trackSize-DataFrameAnnotationTrack-method | 0.009 | 0.000 | 0.009 | |
| trackSize-UCSCBedAnnotationTrack-method | 0.125 | 0.001 | 0.130 | |