Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:26:52 -0400 (Wed, 17 Oct 2018).
Package 652/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
groHMM 1.14.0 Anusha Nagari
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: groHMM |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL groHMM |
StartedAt: 2018-10-15 18:19:29 -0400 (Mon, 15 Oct 2018) |
EndedAt: 2018-10-15 18:19:47 -0400 (Mon, 15 Oct 2018) |
EllapsedTime: 18.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL groHMM ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘groHMM’ ... ** libs gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c AnnotateProbes.c -o AnnotateProbes.o gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c DecayAlgorithm.c -o DecayAlgorithm.o gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c MLEfit.c -o MLEfit.o In file included from MLEfit.c:44:0: hmmHeader.h:281:16: warning: ‘MargainalizeSumLogProbOver’ defined but not used [-Wunused-function] static double MargainalizeSumLogProbOver(int state, int position, ^ hmmHeader.h:301:16: warning: ‘expSum’ defined but not used [-Wunused-function] static double expSum(double *logValues, int length) { ^ gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c RegisterRRoutines.c -o RegisterRRoutines.o gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c Windowing.c -o Windowing.o Windowing.c: In function ‘WindowAnalysis’: Windowing.c:147:6: warning: unused variable ‘II’ [-Wunused-variable] int II = 0; ^ gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c hmmEM.c -o hmmEM.o In file included from hmmHeader.h:36:0, from hmmEM.c:51: UsefulValues.h:39:15: warning: ‘VERY_LARGE_DOUBLE_VALUE’ defined but not used [-Wunused-variable] static double VERY_LARGE_DOUBLE_VALUE = 1e20; ^ In file included from hmmEM.c:51:0: hmmHeader.h:281:16: warning: ‘MargainalizeSumLogProbOver’ defined but not used [-Wunused-function] static double MargainalizeSumLogProbOver(int state, int position, ^ hmmHeader.h:301:16: warning: ‘expSum’ defined but not used [-Wunused-function] static double expSum(double *logValues, int length) { ^ gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c hmmFwBw.c -o hmmFwBw.o In file included from hmmHeader.h:36:0, from hmmFwBw.c:46: UsefulValues.h:39:15: warning: ‘VERY_LARGE_DOUBLE_VALUE’ defined but not used [-Wunused-variable] static double VERY_LARGE_DOUBLE_VALUE = 1e20; ^ In file included from hmmFwBw.c:46:0: hmmHeader.h:281:16: warning: ‘MargainalizeSumLogProbOver’ defined but not used [-Wunused-function] static double MargainalizeSumLogProbOver(int state, int position, ^ hmmHeader.h:301:16: warning: ‘expSum’ defined but not used [-Wunused-function] static double expSum(double *logValues, int length) { ^ gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c hmmMiscFunctions.c -o hmmMiscFunctions.o hmmMiscFunctions.c: In function ‘SStatsNormExp’: hmmMiscFunctions.c:385:10: warning: unused variable ‘wi’ [-Wunused-variable] double wi, *newEx; ^ hmmMiscFunctions.c: In function ‘UpdateNormExp’: hmmMiscFunctions.c:418:10: warning: unused variable ‘epsilon’ [-Wunused-variable] double epsilon=0.00001; ^ In file included from hmmHeader.h:36:0, from hmmMiscFunctions.c:44: hmmMiscFunctions.c: At top level: UsefulValues.h:39:15: warning: ‘VERY_LARGE_DOUBLE_VALUE’ defined but not used [-Wunused-variable] static double VERY_LARGE_DOUBLE_VALUE = 1e20; ^ gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c hmmViterbi.c -o hmmViterbi.o In file included from hmmHeader.h:36:0, from hmmViterbi.c:49: UsefulValues.h:39:15: warning: ‘VERY_LARGE_DOUBLE_VALUE’ defined but not used [-Wunused-variable] static double VERY_LARGE_DOUBLE_VALUE = 1e20; ^ In file included from hmmViterbi.c:49:0: hmmHeader.h:281:16: warning: ‘MargainalizeSumLogProbOver’ defined but not used [-Wunused-function] static double MargainalizeSumLogProbOver(int state, int position, ^ hmmHeader.h:301:16: warning: ‘expSum’ defined but not used [-Wunused-function] static double expSum(double *logValues, int length) { ^ gcc -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o groHMM.so AnnotateProbes.o DecayAlgorithm.o MLEfit.o RegisterRRoutines.o Windowing.o hmmEM.o hmmFwBw.o hmmMiscFunctions.o hmmViterbi.o -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.7-bioc/R/library/groHMM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (groHMM)