Xiuwen Zheng
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/gdsfmt |
| Branch: RELEASE_3_7 |
| Last Commit: 49b0114 |
| Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:51 -0400 (Wed, 17 Oct 2018).
| Package 554/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gdsfmt 1.16.0 Xiuwen Zheng
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: gdsfmt |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gdsfmt_1.16.0.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.16.0.zip && rm gdsfmt_1.16.0.tar.gz gdsfmt_1.16.0.zip |
| StartedAt: 2018-10-16 18:34:59 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:40:04 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 304.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gdsfmt_1.16.0.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gdsfmt_1.16.0.zip && rm gdsfmt_1.16.0.tar.gz gdsfmt_1.16.0.zip
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install for i386
* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c digest.cpp -o digest.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/i386/liblzma.a .
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gdsfmt'
finding HTML links ... done
add.gdsn html
addfile.gdsn html
addfolder.gdsn html
append.gdsn html
apply.gdsn html
assign.gdsn html
cache.gdsn html
cleanup.gds html
closefn.gds html
clusterApply.gdsn html
cnt.gdsn html
compression.gdsn html
copyto.gdsn html
createfn.gds html
delete.attr.gdsn html
delete.gdsn html
diagnosis.gds html
digest.gdsn html
gds.class html
gdsfmt-package html
gdsn.class html
get.attr.gdsn html
getfile.gdsn html
getfolder.gdsn html
index.gdsn html
is.element.gdsn html
lasterr.gds html
ls.gdsn html
moveto.gdsn html
name.gdsn html
objdesp.gdsn html
openfn.gds html
permdim.gdsn html
print.gds.class html
put.attr.gdsn html
read.gdsn html
readex.gdsn html
readmode.gdsn html
rename.gdsn html
setdim.gdsn html
showfile.gds html
summarize.gdsn html
sync.gds html
system.gds html
write.gdsn html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'gdsfmt' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_CoreArray.cpp -o R_CoreArray.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c gdsfmt.cpp -o gdsfmt.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c digest.cpp -o digest.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dAny.cpp -o CoreArray/dAny.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dBase.cpp -o CoreArray/dBase.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dFile.cpp -o CoreArray/dFile.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dStream.cpp -o CoreArray/dStream.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/adler32.c -o ZLIB/adler32.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/compress.c -o ZLIB/compress.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/crc32.c -o ZLIB/crc32.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/deflate.c -o ZLIB/deflate.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/infback.c -o ZLIB/infback.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/inffast.c -o ZLIB/inffast.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/inflate.c -o ZLIB/inflate.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/inftrees.c -o ZLIB/inftrees.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/trees.c -o ZLIB/trees.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/uncompr.c -o ZLIB/uncompr.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ZLIB/zutil.c -o ZLIB/zutil.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LZ4/lz4.c -o LZ4/lz4.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LZ4/lz4hc.c -o LZ4/lz4hc.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LZ4/lz4frame.c -o LZ4/lz4frame.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.3-win.zip
cp XZ/xz-5.2.3/x64/liblzma.a .
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dSerial.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o liblzma.a -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gdsfmt' as gdsfmt_1.16.0.zip
* DONE (gdsfmt)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'gdsfmt' successfully unpacked and MD5 sums checked
In R CMD INSTALL