Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:47:33 -0400 (Wed, 17 Oct 2018).
Package 537/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gaga 2.26.0 David Rossell
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
Package: gaga |
Version: 2.26.0 |
Command: rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gaga_2.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gaga.buildbin-libdir |
StartedAt: 2018-10-17 01:21:31 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:22:21 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 49.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: gaga_2.26.0.tgz |
PackageFileSize: 592.6 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gaga_2.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gaga.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gaga.buildbin-libdir gaga_2.26.0.tar.gz' >>>>>>> * installing *source* package ‘gaga’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c cseqdesma.c -o cseqdesma.o cseqdesma.c:4524:14: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usesumx==0)) { //if suff stat not pre-computed ˜˜˜˜˜˜˜˜^˜˜ cseqdesma.c:4524:14: note: remove extraneous parentheses around the comparison to silence this warning if ((*usesumx==0)) { //if suff stat not pre-computed ˜ ^ ˜ cseqdesma.c:4524:14: note: use '=' to turn this equality comparison into an assignment if ((*usesumx==0)) { //if suff stat not pre-computed ^˜ = cseqdesma.c:5836:13: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usel==0)) { ˜˜˜˜˜^˜˜ cseqdesma.c:5836:13: note: remove extraneous parentheses around the comparison to silence this warning if ((*usel==0)) { ˜ ^ ˜ cseqdesma.c:5836:13: note: use '=' to turn this equality comparison into an assignment if ((*usel==0)) { ^˜ = cseqdesma.c:6070:13: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usel==0)) { ˜˜˜˜˜^˜˜ cseqdesma.c:6070:13: note: remove extraneous parentheses around the comparison to silence this warning if ((*usel==0)) { ˜ ^ ˜ cseqdesma.c:6070:13: note: use '=' to turn this equality comparison into an assignment if ((*usel==0)) { ^˜ = cseqdesma.c:6340:13: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usel==0)) { //If l values have to be generated ˜˜˜˜˜^˜˜ cseqdesma.c:6340:13: note: remove extraneous parentheses around the comparison to silence this warning if ((*usel==0)) { //If l values have to be generated ˜ ^ ˜ cseqdesma.c:6340:13: note: use '=' to turn this equality comparison into an assignment if ((*usel==0)) { //If l values have to be generated ^˜ = 4 warnings generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c cstat.c -o cstat.o cstat.c:1838:6: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if(abs(ndf - 2.0) < eps) { /* df ˜= 2 */ ^ cstat.c:1838:6: note: use function 'fabs' instead if(abs(ndf - 2.0) < eps) { /* df ˜= 2 */ ^˜˜ fabs cstat.c:18:19: warning: unused variable 'interface_c_sccs_id' [-Wunused-const-variable] static const char interface_c_sccs_id[] = "%W%"; ^ cstat.c:19:19: warning: unused variable 'mess_c_sccs_id' [-Wunused-const-variable] static const char mess_c_sccs_id[] = "%W%"; ^ cstat.c:20:19: warning: unused variable 'nrutil_c_sccs_id' [-Wunused-const-variable] static const char nrutil_c_sccs_id[] = "%W%"; ^ cstat.c:21:19: warning: unused variable 'vector_c_sccs_id' [-Wunused-const-variable] static const char vector_c_sccs_id[] = "%W%"; ^ cstat.c:22:19: warning: unused variable 'css_c_sccs_id' [-Wunused-const-variable] static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; ^ 6 warnings generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/gaga.buildbin-libdir/gaga/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gaga) >>>>>>> >>>>>>> FIXING LINKS FOR gaga.buildbin-libdir/gaga/libs//gaga.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "gaga.buildbin-libdir/gaga/libs//gaga.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "gaga.buildbin-libdir/gaga/libs//gaga.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "gaga.buildbin-libdir/gaga/libs//gaga.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "gaga.buildbin-libdir/gaga/libs//gaga.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "gaga.buildbin-libdir/gaga/libs//gaga.so"