Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:49:21 -0400 (Wed, 17 Oct 2018).
Package 521/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
flowType 2.18.0 Nima Aghaeepour
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
Package: flowType |
Version: 2.18.0 |
Command: rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowType_2.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowType.buildbin-libdir |
StartedAt: 2018-10-17 01:20:38 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:21:31 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 52.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: flowType_2.18.0.tgz |
PackageFileSize: 1.23 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowType_2.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowType.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowType.buildbin-libdir flowType_2.18.0.tar.gz' >>>>>>> * installing *source* package ‘flowType’ ... ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include" -I/usr/local/include -fPIC -Wall -g -O2 -c countsAndMeans.cpp -o countsAndMeans.o In file included from countsAndMeans.cpp:5: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include/boost/dynamic_bitset.hpp:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include/boost/dynamic_bitset/dynamic_bitset.hpp:44: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include/boost/move/move.hpp:30: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include/boost/move/iterator.hpp:27: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include/boost/move/detail/iterator_traits.hpp:29:1: warning: inline namespaces are a C++11 feature [-Wc++11-inline-namespace] BOOST_MOVE_STD_NS_BEG ^ /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include/boost/move/detail/std_ns_begin.hpp:18:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD ^ /usr/local/clang4/bin/../include/c++/v1/__config:388:52: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' #define _LIBCPP_BEGIN_NAMESPACE_STD namespace std {inline namespace _LIBCPP_NAMESPACE { ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include" -I/usr/local/include -fPIC -Wall -g -O2 -c flowType.cpp -o flowType.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/BH/include" -I/usr/local/include -fPIC -Wall -g -O2 -c numberGenerator.cpp -o numberGenerator.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowType.so countsAndMeans.o flowType.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/flowType.buildbin-libdir/flowType/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning in rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning in rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE * DONE (flowType) >>>>>>> >>>>>>> FIXING LINKS FOR flowType.buildbin-libdir/flowType/libs//flowType.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so"