flowQ 1.40.0
Mike Jiang
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/flowQ |
| Branch: RELEASE_3_7 |
| Last Commit: 349930f |
| Last Changed Date: 2018-04-30 10:35:06 -0400 (Mon, 30 Apr 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | ...NOT SUPPORTED... |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowQ
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* checking for file ‘flowQ/DESCRIPTION’ ... OK
* preparing ‘flowQ’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: outliers
Loading required package: lattice
Loading required package: flowViz
Loading required package: flowCore
Attaching package: ‘flowCore’
The following object is masked from ‘package:BiocGenerics’:
normalize
Loading required package: mvoutlier
Loading required package: sgeostat
sROC 0.1-2 loaded
Loading required package: bioDist
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: parody
Loading required package: tools
Loading required package: RColorBrewer
Loading required package: latticeExtra
Attaching package: ‘latticeExtra’
The following object is masked from ‘package:flowViz’:
ecdfplot
Using ImageMagic library at /usr/lib/x86_64-linux-gnu/ImageMagick-6.8.9
(version 6.8.9)
identify: not authorized `/tmp/RtmpbhvDNV/flowQ/images/enIffsZEq5/summary.pdf' @ error/constitute.c/ReadImage/412.
Warning in system(paste("identify", shQuote(fileName)), intern = TRUE) :
running command 'identify '/tmp/RtmpbhvDNV/flowQ/images/enIffsZEq5/summary.pdf'' had status 1
Error: processing vignette 'DataQualityAssessment.Rnw' failed with diagnostics:
chunk 1 (label = cellnum)
Error in strsplit(iInf, " ")[[1]] : subscript out of bounds
Execution halted