Yongchao Ge
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/flowPeaks |
| Branch: RELEASE_3_7 |
| Last Commit: 303d6ba |
| Last Changed Date: 2018-04-30 10:35:25 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:36:19 -0400 (Wed, 17 Oct 2018).
| Package 511/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowPeaks 1.26.0 Yongchao Ge
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowPeaks |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowPeaks_1.26.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.26.0.zip && rm flowPeaks_1.26.0.tar.gz flowPeaks_1.26.0.zip |
| StartedAt: 2018-10-16 18:30:49 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:33:30 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 160.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowPeaks_1.26.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.26.0.zip && rm flowPeaks_1.26.0.tar.gz flowPeaks_1.26.0.zip
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install for i386
* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386/Rscript.exe" "../tools/winlibs.R"
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(levels.size()<(i+1)){
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c kmns.cpp -o kmns.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/i386 -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowPeaks'
finding HTML links ... done
adjust.flowPeaks html
assign.flowPeaks html
barcode html
concave html
evalCluster html
flowPeaks html
plot.flowPeaks html
print.flowPeaks html
summary.flowPeaks html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64/Rscript.exe" "../tools/winlibs.R"
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(levels.size()<(i+1)){
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=generic -c kmns.cpp -o kmns.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.26.0.zip
* DONE (flowPeaks)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked
In R CMD INSTALL