Greg Finak
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/flowClust |
| Branch: RELEASE_3_7 |
| Last Commit: 2087659 |
| Last Changed Date: 2018-04-30 10:35:08 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:33:45 -0400 (Wed, 17 Oct 2018).
| Package 501/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowClust 3.18.0 Greg Finak
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: flowClust |
| Version: 3.18.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowClust.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings flowClust_3.18.0.tar.gz |
| StartedAt: 2018-10-17 02:00:46 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 02:12:22 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 695.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: flowClust.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowClust.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings flowClust_3.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/flowClust.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowClust' version '3.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowClust' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpsvXIU7/R.INSTALL1a5c2e6e16e/flowClust/man/tmixFilter.Rd:76: file link 'filter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpsvXIU7/R.INSTALL1a5c2e6e16e/flowClust/man/tmixFilter.Rd:88: file link 'filter' in package 'flowCore' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/flowClust.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
'RBGL' 'ellipse'
All declared Imports should be used.
Unexported object imported by a ':::' call: 'flowViz:::fplot'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.estimateHyperParameters: no visible global function definition for
'cov.shrink'
.estimateHyperParameters: no visible global function definition for
'cov'
.estimateHyperParameters: no visible binding for global variable 'var'
.estimateHyperParameters: no visible global function definition for
'optimize'
.fcbMap: no visible global function definition for 'qf'
.flowClustK: no visible global function definition for 'var'
.flowClustK: no visible global function definition for 'qf'
.flowClustK: no visible global function definition for 'qchisq'
.flowClustK: no visible global function definition for 'quantile'
.flowClustK: no visible global function definition for 'kmeans'
.hist.flowClust: no visible global function definition for 'hist'
.mergePriors: no visible global function definition for 'optim'
dmvt: no visible global function definition for 'mahalanobis'
flowClust2Prior: no visible global function definition for 'cov'
hist.flowClust: no visible global function definition for 'hist'
hist.flowClust: no visible global function definition for 'curve'
hist.flowClust: no visible global function definition for 'stripchart'
hist.flowClustList: no visible global function definition for 'hist'
peakMatch : <anonymous>: no visible global function definition for
'dist'
plotPrior: no visible global function definition for 'na.omit'
plotPrior: no visible global function definition for 'points'
plotPrior: no visible global function definition for 'lines'
plotPrior: no visible global function definition for 'ellipse'
plotPrior: no visible global function definition for 'abline'
plotPrior: no visible global function definition for 'qnorm'
mkPrior,missing-flowFrame-missing-missing: no visible global function
definition for 'cov.shrink'
mkPrior,missing-flowFrame-missing-missing: no visible global function
definition for 'cov'
mkPrior,polygonGate-flowFrame-missing-missing: no visible global
function definition for 'na.omit'
mkPrior,polygonGate-flowFrame-missing-missing: no visible global
function definition for 'cov'
mkPrior,polygonGate-flowFrame-numeric-matrix: no visible global
function definition for 'na.omit'
mkPrior,polygonGate-flowFrame-numeric-matrix: no visible global
function definition for 'cov'
mkPrior,rectangleGate-flowFrame-missing-missing: no visible global
function definition for 'na.omit'
mkPrior,rectangleGate-flowFrame-missing-missing: no visible global
function definition for 'cov'
mkPrior,rectangleGate-flowFrame-numeric-matrix: no visible global
function definition for 'na.omit'
mkPrior,rectangleGate-flowFrame-numeric-matrix: no visible global
function definition for 'cov'
plot,flowClust-missing: no visible global function definition for
'gray'
plot,flowClust-missing: no visible global function definition for
'hist'
plot,flowClust-missing: no visible global function definition for
'title'
plot,flowClust-missing: no visible global function definition for
'points'
plot,flowClust-missing: no visible global function definition for 'qf'
plot,flowClust-missing: no visible global function definition for
'qchisq'
plot,flowClustList-missing: no visible global function definition for
'gray'
plot,flowDens-missing: no visible global function definition for
'contour'
plot,flowDens-missing: no visible global function definition for
'heat.colors'
plot,flowDens-missing: no visible global function definition for
'rainbow'
plot,flowDens-missing: no visible global function definition for
'terrain.colors'
plot,flowDens-missing: no visible global function definition for
'topo.colors'
plot,flowDens-missing: no visible global function definition for
'cm.colors'
plot,flowDens-missing: no visible global function definition for 'gray'
plot,flowDens-missing: no visible global function definition for
'image'
plot,flowFrame-tmixFilterResult: no visible global function definition
for 'hist'
ruleOutliers<-,flowClust-list: no visible global function definition
for 'qf'
ruleOutliers<-,flowClust-list: no visible global function definition
for 'qchisq'
Undefined global functions or variables:
abline cm.colors contour cov cov.shrink curve dist ellipse gray
heat.colors hist image kmeans lines mahalanobis na.omit optim
optimize points qchisq qf qnorm quantile rainbow stripchart
terrain.colors title topo.colors var
Consider adding
importFrom("grDevices", "cm.colors", "gray", "heat.colors", "rainbow",
"terrain.colors", "topo.colors")
importFrom("graphics", "abline", "contour", "curve", "hist", "image",
"lines", "points", "stripchart", "title")
importFrom("stats", "cov", "dist", "kmeans", "mahalanobis", "na.omit",
"optim", "optimize", "qchisq", "qf", "qnorm", "quantile",
"var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.7-bioc/R/library/flowClust/libs/i386/flowClust.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/flowClust.Rcheck/00check.log'
for details.
flowClust.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowClust_3.18.0.tar.gz && rm -rf flowClust.buildbin-libdir && mkdir flowClust.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowClust.buildbin-libdir flowClust_3.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowClust_3.18.0.zip && rm flowClust_3.18.0.tar.gz flowClust_3.18.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1605k 100 1605k 0 0 23.1M 0 --:--:-- --:--:-- --:--:-- 25.7M
install for i386
* installing *source* package 'flowClust' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c BoxCox.c -o BoxCox.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function 'BoxCoxGradientPriors':
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
rowPrecision, rowZ, rowLambda0;
^
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
double *nu0 = p->nu0, kappa0 = p->kappa0;
^
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
int *itersolve = p->itersolve;
^
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
int iter = p->iter;
^
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
int model = *p->model;
^
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
gsl_vector *SumZlogY = p->SumZlogY;
^
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
gsl_matrix *Precision = p->Precision; // will be updated
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c Nu.c -o Nu.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
matrixZUY2;
^
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
^
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
^
flowClust.c: In function 'ECMUpdateSigmaG2':
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
int i=0;
^
flowClust.c: In function 'flowClust':
flowClust.c:383:13: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
x_hi = gsl_root_fsolver_x_upper(s);
^
flowClust.c:713:12: warning: 's3' may be used uninitialized in this function [-Wmaybe-uninitialized]
nu_hi = gsl_min_fminimizer_x_upper(s3);
^
flowClust.c:675:14: warning: 's2' may be used uninitialized in this function [-Wmaybe-uninitialized]
nu_hi = gsl_root_fsolver_x_upper(s2);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:242:13: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
x_hi = gsl_root_fsolver_x_upper(s);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ranMVNT.c -o ranMVNT.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowClust.buildbin-libdir/flowClust/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowClust'
finding HTML links ... done
Map html
SimulateMixture html
Subset html
box html
density html
dmvt html
dmvtmix html
flowClust-package html
flowClust html
flowClust.den html
flowClust2Prior html
hist html
miscellaneous html
mkPrior html
peakMatch html
plot.flowClust html
plot.flowCore html
plot.flowDens html
plotPrior html
rbox html
rituximab html
ruleOutliers html
show.flowClust html
split html
summary html
tmixFilter html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpsvXIU7/R.INSTALL1a5c2e6e16e/flowClust/man/tmixFilter.Rd:76: file link 'filter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpsvXIU7/R.INSTALL1a5c2e6e16e/flowClust/man/tmixFilter.Rd:88: file link 'filter' in package 'flowCore' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'flowClust' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c BoxCox.c -o BoxCox.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function 'BoxCoxGradientPriors':
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
rowPrecision, rowZ, rowLambda0;
^
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
double *nu0 = p->nu0, kappa0 = p->kappa0;
^
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
int *itersolve = p->itersolve;
^
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
int iter = p->iter;
^
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
int model = *p->model;
^
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
gsl_vector *SumZlogY = p->SumZlogY;
^
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
gsl_matrix *Precision = p->Precision; // will be updated
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c Nu.c -o Nu.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
matrixZUY2;
^
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
^
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
^
flowClust.c: In function 'ECMUpdateSigmaG2':
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
int i=0;
^
flowClust.c: In function 'flowClust':
flowClust.c:383:13: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
x_hi = gsl_root_fsolver_x_upper(s);
^
flowClust.c:713:12: warning: 's3' may be used uninitialized in this function [-Wmaybe-uninitialized]
nu_hi = gsl_min_fminimizer_x_upper(s3);
^
flowClust.c:675:14: warning: 's2' may be used uninitialized in this function [-Wmaybe-uninitialized]
nu_hi = gsl_root_fsolver_x_upper(s2);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:242:13: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
x_hi = gsl_root_fsolver_x_upper(s);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ranMVNT.c -o ranMVNT.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowClust.buildbin-libdir/flowClust/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowClust' as flowClust_3.18.0.zip
* DONE (flowClust)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'flowClust' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
flowClust.Rcheck/tests_i386/testthat.Rout
R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(flowClust)
Attaching package: 'flowClust'
The following object is masked from 'package:graphics':
box
>
> test_check("flowClust")
== testthat results ===========================================================
OK: 40 SKIPPED: 1 FAILED: 0
>
> #devtools::test("˜/rglab/workspace/flowClust")
>
> #taking quite some time , thus only for internal testing
> #test_file("˜/rglab/workspace/flowClust/tests/testthat/flowClust-gated-data.R")
> #tools::checkDocFiles(dir = ".")
>
> proc.time()
user system elapsed
322.46 1.00 323.45
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flowClust.Rcheck/tests_x64/testthat.Rout
R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
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> library(testthat)
> library(flowClust)
Attaching package: 'flowClust'
The following object is masked from 'package:graphics':
box
>
> test_check("flowClust")
== testthat results ===========================================================
OK: 40 SKIPPED: 1 FAILED: 0
>
> #devtools::test("˜/rglab/workspace/flowClust")
>
> #taking quite some time , thus only for internal testing
> #test_file("˜/rglab/workspace/flowClust/tests/testthat/flowClust-gated-data.R")
> #tools::checkDocFiles(dir = ".")
>
> proc.time()
user system elapsed
244.79 0.68 245.48
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flowClust.Rcheck/examples_i386/flowClust-Ex.timings
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flowClust.Rcheck/examples_x64/flowClust-Ex.timings
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