Laure Cougnaud
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/esetVis |
| Branch: RELEASE_3_7 |
| Last Commit: 1271764 |
| Last Changed Date: 2018-10-08 10:17:04 -0400 (Mon, 08 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:28 -0400 (Wed, 17 Oct 2018).
| Package 463/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| esetVis 1.6.3 Laure Cougnaud
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: esetVis |
| Version: 1.6.3 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:esetVis.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings esetVis_1.6.3.tar.gz |
| StartedAt: 2018-10-17 01:51:56 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:57:15 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 319.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: esetVis.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:esetVis.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings esetVis_1.6.3.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/esetVis.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'esetVis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'esetVis' version '1.6.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'esetVis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getMethodsInputObjectEsetVis: no visible binding for global variable
'rowData'
getMethodsInputObjectEsetVis: no visible binding for global variable
'colData'
getMethodsInputObjectEsetVis: no visible binding for global variable
'assay'
getMethodsInputObjectEsetVis : <anonymous>: no visible global function
definition for 'colData'
getMethodsInputObjectEsetVis : <anonymous>: no visible global function
definition for 'rowData'
ggvisPlotEset: no visible global function definition for ':='
ggvisPlotEset: no visible binding for global variable 'fill'
ggvisPlotEset: no visible binding for global variable 'shape'
ggvisPlotEset: no visible binding for global variable 'size'
ggvisPlotEset: no visible binding for global variable 'opacity'
ggvisPlotEset: no visible global function definition for '%>%'
ggvisPlotEset: no visible global function definition for
'scale_ordinal'
ggvisPlotEset: no visible global function definition for 'set_options'
Undefined global functions or variables:
%>% := assay colData fill opacity rowData scale_ordinal set_options
shape size
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getGeneSetsForPlot 76.46 13.53 90.04
esetPlotWrapper 7.44 0.41 7.84
esetLda 7.25 0.31 7.56
esetSpectralMap 5.21 0.37 5.58
esetTsne 5.47 0.08 5.54
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getGeneSetsForPlot 76.44 2.25 78.70
esetLda 7.35 0.17 7.52
esetPlotWrapper 6.03 0.27 6.30
esetTsne 5.42 0.22 5.64
esetSpectralMap 4.98 0.34 5.33
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/esetVis.Rcheck/00check.log'
for details.
esetVis.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/esetVis_1.6.3.tar.gz && rm -rf esetVis.buildbin-libdir && mkdir esetVis.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=esetVis.buildbin-libdir esetVis_1.6.3.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL esetVis_1.6.3.zip && rm esetVis_1.6.3.tar.gz esetVis_1.6.3.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 42967 100 42967 0 0 814k 0 --:--:-- --:--:-- --:--:-- 932k
install for i386
* installing *source* package 'esetVis' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'esetVis'
finding HTML links ... done
esetLda html
finding level-2 HTML links ... done
esetPlot-class html
esetPlotInteractive-class html
esetPlotWrapper html
esetSpectralMap html
esetTsne html
formatManualScale html
formatOutput html
getAxesLimits-methods html
getCoordGeneSets html
getDataPlotSamplesWithAnnotation-methods
html
getGeneSetsForPlot html
getMethodsInputObjectEsetVis html
ggPlotEset html
ggplotEsetPlot-class html
ggvisEsetPlot-class html
ggvisPlotEset html
plotEset-methods html
plotTopElements html
rbokehEsetPlot-class html
rbokehPlotEset html
setFixElement html
setManualScale html
simpleCap html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'esetVis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'esetVis' as esetVis_1.6.3.zip
* DONE (esetVis)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'esetVis' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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esetVis.Rcheck/examples_i386/esetVis-Ex.timings
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esetVis.Rcheck/examples_x64/esetVis-Ex.timings
|