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INSTALL report for easyRNASeq on tokay2

This page was generated on 2018-10-17 08:35:59 -0400 (Wed, 17 Oct 2018).

Package 423/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.16.0
Nicolas Delhomme
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/easyRNASeq
Branch: RELEASE_3_7
Last Commit: 09fe48d
Last Changed Date: 2018-04-30 10:35:23 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: easyRNASeq
Version: 2.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/easyRNASeq_2.16.0.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.16.0.zip && rm easyRNASeq_2.16.0.tar.gz easyRNASeq_2.16.0.zip
StartedAt: 2018-10-16 19:45:20 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:47:30 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 129.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/easyRNASeq_2.16.0.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.16.0.zip && rm easyRNASeq_2.16.0.tar.gz easyRNASeq_2.16.0.zip
###
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install for i386

* installing *source* package 'easyRNASeq' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq'
Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
  converting help for package 'easyRNASeq'
    finding HTML links ... done
    DESeq-methods                           html  
    finding level-2 HTML links ... done

    GenomicRanges-methods                   html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/GenomicRanges-methods.Rd:20: file link 'colnames' in package 'BiocGenerics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/GenomicRanges-methods.Rd:22: file link 'colnames' in package 'BiocGenerics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/GenomicRanges-methods.Rd:93: file link 'colnames' in package 'BiocGenerics' does not exist and so has been treated as a topic
    IRanges-methods                         html  
    Rsamtools-methods                       html  
    ShortRead-methods                       html  
    basename-methods                        html  
    easyRNASeq-AnnotParam-accessors         html  
    easyRNASeq-AnnotParam-class             html  
    easyRNASeq-AnnotParam                   html  
    easyRNASeq-BamFileList                  html  
    easyRNASeq-BamParam-accessors           html  
    easyRNASeq-BamParam-class               html  
    easyRNASeq-BamParam                     html  
    easyRNASeq-RnaSeqParam-accessors        html  
    easyRNASeq-RnaSeqParam-class            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/easyRNASeq-RnaSeqParam-class.Rd:14: file link 'summarizeOverlaps' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/easyRNASeq-RnaSeqParam-class.Rd:37: file link 'summarizeOverlaps' in package 'GenomicAlignments' does not exist and so has been treated as a topic
    easyRNASeq-RnaSeqParam                  html  
    easyRNASeq-accessors                    html  
    easyRNASeq-annotation-internal-methods
                                            html  
    easyRNASeq-annotation-methods           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/easyRNASeq-annotation-methods.Rd:38: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
    easyRNASeq-class                        html  
    easyRNASeq-correction-methods           html  
    easyRNASeq-coverage-methods             html  
    easyRNASeq-datasets                     html  
    easyRNASeq-defunct-annotation-methods   html  
    easyRNASeq-defunct                      html  
    easyRNASeq-easyRNASeq                   html  
    easyRNASeq-global-variables             html  
    easyRNASeq-internal-AnnotParam-methods
                                            html  
    easyRNASeq-internal-methods             html  
    easyRNASeq-island-methods               html  
    easyRNASeq-package                      html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/easyRNASeq-package.Rd:133: file link 'BamFileList' in package 'Rsamtools' does not exist and so has been treated as a topic
    easyRNASeq-simpleRNASeq                 html  
    easyRNASeq-summarization-internal-methods
                                            html  
    easyRNASeq-summarization-methods        html  
    easyRNASeq-synthetic-transcripts        html  
    edgeR-methods                           html  
    file.exists-methods                     html  
    genomeIntervals-methods                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/genomeIntervals-methods.Rd:39: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
    parallel-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/parallel-methods.Rd:41: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpEHYsYT/R.INSTALL1f9478f858c4/easyRNASeq/man/parallel-methods.Rd:42: file link 'stopCluster' in package 'parallel' does not exist and so has been treated as a topic
    print-methods                           html  
    show-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'easyRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'easyRNASeq' as easyRNASeq_2.16.0.zip
* DONE (easyRNASeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'easyRNASeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL