Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:24:08 -0400 (Wed, 17 Oct 2018).
Package 360/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
deepSNV 1.26.1 Moritz Gerstung
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: deepSNV |
Version: 1.26.1 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL deepSNV |
StartedAt: 2018-10-15 18:23:47 -0400 (Mon, 15 Oct 2018) |
EndedAt: 2018-10-15 18:24:14 -0400 (Mon, 15 Oct 2018) |
EllapsedTime: 27.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL deepSNV ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘deepSNV’ ... checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for off_t... yes checking for size_t... yes configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.7-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c bam2R.cpp -o bam2R.o bam2R.cpp: In function ‘int bam2R(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*)’: bam2R.cpp:76:13: warning: unused variable ‘iter’ [-Wunused-variable] hts_itr_t *iter = NULL; ^ bam2R.cpp:79:6: warning: unused variable ‘c’ [-Wunused-variable] int c = 0; ^ gcc -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.7-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c betabinom.c -o betabinom.o betabinom.c: In function ‘pbb’: betabinom.c:27:9: warning: unused variable ‘log’ [-Wunused-variable] int i, log=0; ^ g++ -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o deepSNV.so bam2R.o betabinom.o -L/home/biocbuild/bbs-3.7-bioc/R/library/Rhtslib/usrlib -Wl,-rpath,/home/biocbuild/bbs-3.7-bioc/R/library/Rhtslib/usrlib -lhts -lz -lm -lbz2 -llzma -lpthread -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.7-bioc/R/library/deepSNV/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (deepSNV)