Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:27 -0400 (Wed, 17 Oct 2018).
Package 325/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
crossmeta 1.6.0 Alex Pickering
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: crossmeta |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:crossmeta.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings crossmeta_1.6.0.tar.gz |
StartedAt: 2018-10-17 01:23:24 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:25:41 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 136.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: crossmeta.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:crossmeta.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings crossmeta_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/crossmeta.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'crossmeta/DESCRIPTION' ... OK * this is package 'crossmeta' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'crossmeta' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOknbmB/R.INSTALL126056a93641/crossmeta/man/es_meta.Rd:37: file link 'zScores' in package 'GeneMeta' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/crossmeta.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Missing or unexported objects: 'crossmeta::gs.names' 'crossmeta::gslist' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE explore_paths : server: no visible binding for global variable 'gslist' explore_paths : server: no visible binding for global variable 'gs.names' Undefined global functions or variables: gs.names gslist * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data with usage in documentation object 'gs.names' but not in code: gs.names Data with usage in documentation object 'gslist' but not in code: gslist * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed diff_path 6.35 0.37 6.72 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed diff_path 5.59 0.12 5.72 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 2 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/crossmeta.Rcheck/00check.log' for details.
crossmeta.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/crossmeta_1.6.0.tar.gz && rm -rf crossmeta.buildbin-libdir && mkdir crossmeta.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=crossmeta.buildbin-libdir crossmeta_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL crossmeta_1.6.0.zip && rm crossmeta_1.6.0.tar.gz crossmeta_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 657k 100 657k 0 0 2251k 0 --:--:-- --:--:-- --:--:-- 2308k install for i386 * installing *source* package 'crossmeta' ... ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'crossmeta' finding HTML links ... done add_sources html contribute html diff_expr html diff_path html es_meta html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOknbmB/R.INSTALL126056a93641/crossmeta/man/es_meta.Rd:37: file link 'zScores' in package 'GeneMeta' does not exist and so has been treated as a topic explore_paths html get_raw html gs.names html gslist html load_diff html load_path html load_raw html open_raw_illum html path_meta html setup_prev html symbol_annot html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'crossmeta' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'crossmeta' as crossmeta_1.6.0.zip * DONE (crossmeta) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'crossmeta' successfully unpacked and MD5 sums checked In R CMD INSTALL
crossmeta.Rcheck/tests_i386/testthat.Rout R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(crossmeta) > > test_check("crossmeta") AnnotatingAnnotatingAnnotatingGSE1_FOO-VEH (# p < 0.05): 3 GSE1_FOO-VEH (# p < 0.05): 3 GSE1_FOO-VEH (# p < 0.05): 3 == testthat results =========================================================== OK: 14 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 8.65 0.37 9.01 |
crossmeta.Rcheck/tests_x64/testthat.Rout R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(crossmeta) > > test_check("crossmeta") AnnotatingAnnotatingAnnotatingGSE1_FOO-VEH (# p < 0.05): 3 GSE1_FOO-VEH (# p < 0.05): 3 GSE1_FOO-VEH (# p < 0.05): 3 == testthat results =========================================================== OK: 14 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 7.75 0.34 8.09 |
crossmeta.Rcheck/examples_i386/crossmeta-Ex.timings
|
crossmeta.Rcheck/examples_x64/crossmeta-Ex.timings
|