Kasper Daniel Hansen
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/cqn |
| Branch: RELEASE_3_7 |
| Last Commit: c473040 |
| Last Changed Date: 2018-04-30 10:35:19 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:35:28 -0400 (Wed, 17 Oct 2018).
| Package 319/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cqn 1.26.0 Kasper Daniel Hansen
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: cqn |
| Version: 1.26.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cqn.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings cqn_1.26.0.tar.gz |
| StartedAt: 2018-10-17 01:22:41 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:23:56 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 75.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cqn.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cqn.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings cqn_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/cqn.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cqn/DESCRIPTION' ... OK
* this is package 'cqn' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cqn' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'splines'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'mclust' 'preprocessCore' 'quantreg'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SQN2: no visible binding for global variable 'median'
SQN2: no visible global function definition for 'Mclust'
cqn : fixPredictor: no visible global function definition for
'quantile'
cqn: no visible global function definition for 'median'
cqn : <anonymous>: no visible global function definition for 'rq'
cqn : <anonymous>: no visible global function definition for 'predict'
cqn : <anonymous>: no visible global function definition for 'coef'
cqnplot: no visible global function definition for 'matplot'
cqnplot: no visible global function definition for 'rug'
mix.qn: no visible global function definition for 'ecdf'
mix.qn: no visible global function definition for 'quantile'
norm.pickrell: no visible global function definition for 'quantile'
norm.pickrell : <anonymous>: no visible global function definition for
'smooth.spline'
norm.pickrell : <anonymous>: no visible global function definition for
'predict'
Undefined global functions or variables:
Mclust coef ecdf matplot median predict quantile rq rug smooth.spline
Consider adding
importFrom("graphics", "matplot", "rug")
importFrom("stats", "coef", "ecdf", "median", "predict", "quantile",
"smooth.spline")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/cqn.Rcheck/00check.log'
for details.
cqn.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/cqn_1.26.0.tar.gz && rm -rf cqn.buildbin-libdir && mkdir cqn.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cqn.buildbin-libdir cqn_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL cqn_1.26.0.zip && rm cqn_1.26.0.tar.gz cqn_1.26.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 474k 100 474k 0 0 6901k 0 --:--:-- --:--:-- --:--:-- 7659k
install for i386
* installing *source* package 'cqn' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cqn'
finding HTML links ... done
cqn html
cqnplot html
montgomery.subset html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'cqn' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cqn' as cqn_1.26.0.zip
* DONE (cqn)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'cqn' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
cqn.Rcheck/examples_i386/cqn-Ex.timings
|
cqn.Rcheck/examples_x64/cqn-Ex.timings
|