Package: cosmiq

Version: 1.14.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/cosmiq_1.14.0.tar.gz && rm -rf cosmiq.buildbin-libdir && mkdir cosmiq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmiq.buildbin-libdir cosmiq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL cosmiq_1.14.0.zip && rm cosmiq_1.14.0.tar.gz cosmiq_1.14.0.zip

StartedAt: 2018-10-16 19:53:57 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 19:54:30 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 33.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/cosmiq_1.14.0.tar.gz && rm -rf cosmiq.buildbin-libdir && mkdir cosmiq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmiq.buildbin-libdir cosmiq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL cosmiq_1.14.0.zip && rm cosmiq_1.14.0.tar.gz cosmiq_1.14.0.zip
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install for i386

* installing *source* package 'cosmiq' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c util.c -o util.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o cosmiq.dll tmp.def util.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/cosmiq.buildbin-libdir/cosmiq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cosmiq'
    finding HTML links ... done
    combine_spectra                         html  
    cosmiq                                  html  
    create_datamatrix                       html  
    eicmatrix                               html  
    peakdetection                           html  
    quantify_combined                       html  
    retention_time                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'cosmiq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c util.c -o util.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o cosmiq.dll tmp.def util.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/cosmiq.buildbin-libdir/cosmiq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cosmiq' as cosmiq_1.14.0.zip
* DONE (cosmiq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'cosmiq' successfully unpacked and MD5 sums checked
In R CMD INSTALL