Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:21:13 -0400 (Wed, 17 Oct 2018).
Package 303/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
convert 1.56.0 Yee Hwa (Jean) Yang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: convert |
Version: 1.56.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:convert.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings convert_1.56.0.tar.gz |
StartedAt: 2018-10-15 23:28:53 -0400 (Mon, 15 Oct 2018) |
EndedAt: 2018-10-15 23:29:19 -0400 (Mon, 15 Oct 2018) |
EllapsedTime: 25.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: convert.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:convert.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings convert_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/convert.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘convert/DESCRIPTION’ ... OK * this is package ‘convert’ version ‘1.56.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘convert’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Biobase’ ‘limma’ ‘marray’ ‘methods’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE coerce,MAList-ExpressionSet: no visible global function definition for ‘new’ coerce,MAList-ExpressionSet: no visible global function definition for ‘notes<-’ coerce,MAList-marrayNorm: no visible global function definition for ‘new’ coerce,RGList-NChannelSet: no visible global function definition for ‘new’ coerce,RGList-NChannelSet: no visible binding for global variable ‘df’ coerce,RGList-marrayRaw: no visible global function definition for ‘new’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘new’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘notes<-’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘maM’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘maLabels’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘maGnames’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘maInfo’ coerce,marrayNorm-ExpressionSet: no visible global function definition for ‘maTargets’ coerce,marrayNorm-MAList: no visible global function definition for ‘new’ coerce,marrayNorm-MAList: no visible global function definition for ‘getClass’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maRf’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maGf’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maRb’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maGb’ coerce,marrayRaw-NChannelSet: no visible binding for global variable ‘assayDataNew’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maInfo’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maTargets’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘new’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maGnames’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘phenoData<-’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘sampleNames’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘sampleNames<-’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘maLabels’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘featureData<-’ coerce,marrayRaw-NChannelSet: no visible global function definition for ‘featureNames<-’ coerce,marrayRaw-RGList: no visible global function definition for ‘new’ Undefined global functions or variables: assayDataNew df featureData<- featureNames<- getClass maGb maGf maGnames maInfo maLabels maM maRb maRf maTargets new notes<- phenoData<- sampleNames sampleNames<- Consider adding importFrom("methods", "getClass", "new") importFrom("stats", "df") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.7-bioc/meat/convert.Rcheck/00check.log’ for details.
convert.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL convert ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘convert’ ... ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (convert)
convert.Rcheck/convert-Ex.timings
name | user | system | elapsed | |
coerce | 0.240 | 0.004 | 0.242 | |