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This page was generated on 2018-10-17 08:41:41 -0400 (Wed, 17 Oct 2018).
Package 301/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
contiBAIT 1.8.0 Kieran O'Neill
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: contiBAIT |
Version: 1.8.0 |
Command: rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=contiBAIT.buildbin-libdir contiBAIT_1.8.0.tar.gz |
StartedAt: 2018-10-17 06:11:59 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 06:13:29 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 90.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: contiBAIT_1.8.0.zip |
PackageFileSize: 4.848 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=contiBAIT.buildbin-libdir contiBAIT_1.8.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'contiBAIT' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c buildLinkageGroups.cpp -o buildLinkageGroups.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c computeSim.cpp -o computeSim.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c orderContigsGreedy.cpp -o orderContigsGreedy.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o contiBAIT.dll tmp.def buildLinkageGroups.o computeSim.o orderContigsGreedy.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/contiBAIT.buildbin-libdir/contiBAIT/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' ** help *** installing help indices converting help for package 'contiBAIT' finding HTML links ... done BAIT html ChrTable html ContigOrdering html LibraryGroupList html LinkageGroupList html StrandFreqMatrix html StrandReadMatrix html StrandStateList html StrandStateMatrix html barplotLinkageGroupCalls-LinkageGroupList-ChrTable-method html clusterContigs-StrandStateMatrix-method html contiBAIT html exampleChrTable html exampleContigOrder html exampleCrickFreq html exampleDividedChr html exampleLGList html exampleLibList html exampleReadCounts html exampleStrandFreq html exampleWCMatrix html exampleWatsonFreq html findSexGroups-LinkageGroupList-StrandStateMatrix-method html findSimilarLibraries html fixLinkageGroups html flipOrderedLinkageGroups html highlightAssemblyErrors html ideogramPlot-StrandReadMatrix-StrandReadMatrix-ChrTable-method html locateMisorients html makeBoxPlot html makeChrTable html mapGapFromOverlap html mergeFlankedLGs html orderAllLinkageGroups html orderContigsGreedy html orderContigsTSP html plotContigOrder html plotLGDistances-LinkageGroupList-StrandStateMatrix-method html plotWCdistribution-StrandFreqMatrix-method html preprocessStrandTable-StrandFreqMatrix-method html reorientAndMergeLGs html show-ContigOrdering-method html show-LibraryGroupList-method html show-LinkageGroupList-method html show-OrientationFrame-method html show-StrandFreqMatrix-method html show-StrandReadMatrix-method html show-StrandStateList-method html show-StrandStateMatrix-method html strandSeqFreqTable html thoroughBed html writeBed html ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' In R CMD INSTALL install for x64 * installing *source* package 'contiBAIT' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c buildLinkageGroups.cpp -o buildLinkageGroups.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c computeSim.cpp -o computeSim.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c orderContigsGreedy.cpp -o orderContigsGreedy.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o contiBAIT.dll tmp.def buildLinkageGroups.o computeSim.o orderContigsGreedy.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/contiBAIT.buildbin-libdir/contiBAIT/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' * MD5 sums packaged installation of 'contiBAIT' as contiBAIT_1.8.0.zip * DONE (contiBAIT) In R CMD INSTALL In R CMD INSTALL