Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:43:53 -0400 (Wed, 17 Oct 2018).
Package 200/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cellbaseR 1.4.0 Mohammed OE Abdallah
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: cellbaseR |
Version: 1.4.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cellbaseR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings cellbaseR_1.4.0.tar.gz |
StartedAt: 2018-10-17 00:58:27 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:03:41 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 313.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: cellbaseR.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cellbaseR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings cellbaseR_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/cellbaseR.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'cellbaseR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cellbaseR' version '1.4.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cellbaseR' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSqMhDu/R.INSTALL17bc7ceb7a3d/cellbaseR/man/createGeneModel.Rd:23: file link 'GeneRegionTrack' in package 'Gviz' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/cellbaseR.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed AnnotateVcf-CellBaseR-method 6.35 1.2 49.46 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed AnnotateVcf-CellBaseR-method 5.44 1.32 83.89 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/cellbaseR.Rcheck/00check.log' for details.
cellbaseR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/cellbaseR_1.4.0.tar.gz && rm -rf cellbaseR.buildbin-libdir && mkdir cellbaseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellbaseR.buildbin-libdir cellbaseR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL cellbaseR_1.4.0.zip && rm cellbaseR_1.4.0.tar.gz cellbaseR_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 773k 100 773k 0 0 12.7M 0 --:--:-- --:--:-- --:--:-- 14.5M install for i386 * installing *source* package 'cellbaseR' ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cellbaseR' finding HTML links ... done AnnotateVcf-CellBaseR-method html CellBaseParam-class html CellBaseParam html CellBaseR-class html CellBaseR html cellbaseR-package html createGeneModel html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSqMhDu/R.INSTALL17bc7ceb7a3d/cellbaseR/man/createGeneModel.Rd:23: file link 'GeneRegionTrack' in package 'Gviz' does not exist and so has been treated as a topic getCaddScores html getCellBase-CellBaseR-method html getCellBaseResourceHelp html getChromosomeInfo-CellBaseR-method html getClinical-CellBaseR-method html getClinicalByGene html getClinicalByRegion html getConservationByRegion html getGene-CellBaseR-method html getGeneInfo html getMeta-CellBaseR-method html getProtein-CellBaseR-method html getProteinInfo html getRegion-CellBaseR-method html getRegulatoryByRegion html getSnp-CellBaseR-method html getSnpByGene html getTf-CellBaseR-method html getTfbsByRegion html getTranscript-CellBaseR-method html getTranscriptByGene html getVariant-CellBaseR-method html getVariantAnnotation html getXref-CellBaseR-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'cellbaseR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cellbaseR' as cellbaseR_1.4.0.zip * DONE (cellbaseR) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'cellbaseR' successfully unpacked and MD5 sums checked In R CMD INSTALL
cellbaseR.Rcheck/examples_i386/cellbaseR-Ex.timings
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cellbaseR.Rcheck/examples_x64/cellbaseR-Ex.timings
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