Sandro Morganella
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/Vega |
| Branch: RELEASE_3_7 |
| Last Commit: 1fd439c |
| Last Changed Date: 2018-04-30 10:35:15 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:35:05 -0400 (Wed, 17 Oct 2018).
| Package 1535/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Vega 1.28.0 Sandro Morganella
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: Vega |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Vega_1.28.0.tar.gz && rm -rf Vega.buildbin-libdir && mkdir Vega.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Vega.buildbin-libdir Vega_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Vega_1.28.0.zip && rm Vega_1.28.0.tar.gz Vega_1.28.0.zip |
| StartedAt: 2018-10-16 18:31:55 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:32:28 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 32.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Vega_1.28.0.tar.gz && rm -rf Vega.buildbin-libdir && mkdir Vega.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Vega.buildbin-libdir Vega_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Vega_1.28.0.zip && rm Vega_1.28.0.tar.gz Vega_1.28.0.zip
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install for i386
* installing *source* package 'Vega' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c vega.c -o vega.o
vega.c: In function 'heap_delete':
vega.c:201:8: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
node deleted;
^
vega.c: In function 'vega':
vega.c:355:13: warning: unused variable 'maxptr' [-Wunused-variable]
node max, *maxptr, tmp_node;
^
vega.c:348:68: warning: unused variable 'tmp_lambda2' [-Wunused-variable]
double lambda, lambda_gradient, stop_lambda_gradient, tmp_lambda, tmp_lambda2;
^
vega.c:347:6: warning: unused variable 'index' [-Wunused-variable]
int index;
^
vega.c: In function 'update_priority':
vega.c:560:64: warning: unused variable 'next_mean' [-Wunused-variable]
double lambda, first_term, second_term, prev_mean, curr_mean, next_mean;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Vega.dll tmp.def vega.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Vega.buildbin-libdir/Vega/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Vega'
finding HTML links ... done
G519 html
Vega-package html
plotSegmentation html
vega html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Vega' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c vega.c -o vega.o
vega.c: In function 'heap_delete':
vega.c:201:8: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
node deleted;
^
vega.c: In function 'vega':
vega.c:355:13: warning: unused variable 'maxptr' [-Wunused-variable]
node max, *maxptr, tmp_node;
^
vega.c:348:68: warning: unused variable 'tmp_lambda2' [-Wunused-variable]
double lambda, lambda_gradient, stop_lambda_gradient, tmp_lambda, tmp_lambda2;
^
vega.c:347:6: warning: unused variable 'index' [-Wunused-variable]
int index;
^
vega.c: In function 'update_priority':
vega.c:560:64: warning: unused variable 'next_mean' [-Wunused-variable]
double lambda, first_term, second_term, prev_mean, curr_mean, next_mean;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Vega.dll tmp.def vega.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Vega.buildbin-libdir/Vega/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Vega' as Vega_1.28.0.zip
* DONE (Vega)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'Vega' successfully unpacked and MD5 sums checked
In R CMD INSTALL