Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:43:30 -0400 (Wed, 17 Oct 2018).
Package 1468/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TCGAbiolinksGUI 1.6.1 Tiago C. Silva
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: TCGAbiolinksGUI |
Version: 1.6.1 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAbiolinksGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings TCGAbiolinksGUI_1.6.1.tar.gz |
StartedAt: 2018-10-17 05:09:55 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 05:19:50 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 594.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TCGAbiolinksGUI.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAbiolinksGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings TCGAbiolinksGUI_1.6.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/TCGAbiolinksGUI.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'TCGAbiolinksGUI/DESCRIPTION' ... OK * this is package 'TCGAbiolinksGUI' version '1.6.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'TCGAbiolinksGUI' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: 'DT' 'IlluminaHumanMethylation27kanno.ilmn12.hg19' 'IlluminaHumanMethylation27kmanifest' 'IlluminaHumanMethylation450kanno.ilmn12.hg19' 'IlluminaHumanMethylation450kmanifest' 'IlluminaHumanMethylationEPICanno.ilm10b2.hg19' 'IlluminaHumanMethylationEPICmanifest' 'minfi' All declared Imports should be used. Package in Depends field not imported from: 'TCGAbiolinksGUI.data' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/TCGAbiolinksGUI.Rcheck/00check.log' for details.
TCGAbiolinksGUI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/TCGAbiolinksGUI_1.6.1.tar.gz && rm -rf TCGAbiolinksGUI.buildbin-libdir && mkdir TCGAbiolinksGUI.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI_1.6.1.zip && rm TCGAbiolinksGUI_1.6.1.tar.gz TCGAbiolinksGUI_1.6.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 7162k 100 7162k 0 0 43.1M 0 --:--:-- --:--:-- --:--:-- 45.1M install for i386 * installing *source* package 'TCGAbiolinksGUI' ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TCGAbiolinksGUI' finding HTML links ... done TCGAbiolinksGUI html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'TCGAbiolinksGUI' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'TCGAbiolinksGUI' as TCGAbiolinksGUI_1.6.1.zip * DONE (TCGAbiolinksGUI) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'TCGAbiolinksGUI' successfully unpacked and MD5 sums checked In R CMD INSTALL
TCGAbiolinksGUI.Rcheck/examples_i386/TCGAbiolinksGUI-Ex.timings
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TCGAbiolinksGUI.Rcheck/examples_x64/TCGAbiolinksGUI-Ex.timings
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