Isar Nassiri
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/SRGnet |
| Branch: RELEASE_3_7 |
| Last Commit: a59f0e4 |
| Last Changed Date: 2018-04-30 10:35:42 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:23 -0400 (Wed, 17 Oct 2018).
| Package 1425/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SRGnet 1.6.0 Isar Nassiri
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SRGnet |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SRGnet.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings SRGnet_1.6.0.tar.gz |
| StartedAt: 2018-10-17 05:01:45 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 05:05:17 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 212.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SRGnet.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SRGnet.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings SRGnet_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/SRGnet.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SRGnet/DESCRIPTION' ... OK
* this is package 'SRGnet' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'EBcoexpress' 'MASS' 'igraph' 'pvclust' 'gbm' 'limma' 'DMwR'
'matrixStats' 'Hmisc'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SRGnet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SRGnet: no visible binding for global variable
'Differentially_expressed_genes'
SRGnet: no visible binding for global variable 'Transcriptomics'
SRGnet: no visible binding for global variable 'PLCRG'
SRGnet: no visible global function definition for 'ebPatterns'
SRGnet: no visible global function definition for 'par'
SRGnet: no visible global function definition for 'boxplot'
SRGnet: no visible global function definition for 'plot'
SRGnet: no visible global function definition for 'predict'
SRGnet: no visible global function definition for 'terrain.colors'
SRGnet: no visible global function definition for 'na.omit'
SRGnet: no visible global function definition for 'write.table'
Undefined global functions or variables:
Differentially_expressed_genes PLCRG Transcriptomics boxplot
ebPatterns na.omit par plot predict terrain.colors write.table
Consider adding
importFrom("grDevices", "terrain.colors")
importFrom("graphics", "boxplot", "par", "plot")
importFrom("stats", "na.omit", "predict")
importFrom("utils", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
SRGnet 42.01 0.28 42.3
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
SRGnet 56.96 0.22 57.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/SRGnet.Rcheck/00check.log'
for details.
SRGnet.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SRGnet_1.6.0.tar.gz && rm -rf SRGnet.buildbin-libdir && mkdir SRGnet.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SRGnet.buildbin-libdir SRGnet_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SRGnet_1.6.0.zip && rm SRGnet_1.6.0.tar.gz SRGnet_1.6.0.zip
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install for i386
* installing *source* package 'SRGnet' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SRGnet'
finding HTML links ... done
Differentially_expressed_genes html
PLCRG html
SRGnet html
Transcriptomics html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'SRGnet' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SRGnet' as SRGnet_1.6.0.zip
* DONE (SRGnet)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SRGnet' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
SRGnet.Rcheck/examples_i386/SRGnet-Ex.timings
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SRGnet.Rcheck/examples_x64/SRGnet-Ex.timings
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