Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:37:04 -0400 (Wed, 17 Oct 2018).
Package 1407/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SPEM 1.20.0 Xinyi YANG
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SPEM |
Version: 1.20.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SPEM.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings SPEM_1.20.0.tar.gz |
StartedAt: 2018-10-17 04:59:06 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 05:00:23 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 76.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SPEM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SPEM.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings SPEM_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/SPEM.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SPEM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SPEM' version '1.20.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SPEM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'Biobase' 'Rsolnp' 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE opt_parameter: no visible global function definition for 'solnp' SPEM,ExpressionSet: no visible global function definition for 'exprs' SPEM,ExpressionSet: no visible global function definition for 'pData' pre_prepare,ExpressionSet: no visible global function definition for 'runif' row_optimize,ExpressionSet: no visible global function definition for 'exprs' s_diff,ExpressionSet: no visible global function definition for 'exprs' s_diff,ExpressionSet: no visible global function definition for 'pData' s_diff,ExpressionSet : pre_smooth: no visible global function definition for 'predict' s_diff,ExpressionSet : pre_smooth: no visible global function definition for 'smooth.spline' Undefined global functions or variables: exprs pData predict runif smooth.spline solnp Consider adding importFrom("stats", "predict", "runif", "smooth.spline") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed row_optimize 23.97 0.05 24.02 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed row_optimize 6.12 0.06 6.19 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/SPEM.Rcheck/00check.log' for details.
SPEM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SPEM_1.20.0.tar.gz && rm -rf SPEM.buildbin-libdir && mkdir SPEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPEM.buildbin-libdir SPEM_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SPEM_1.20.0.zip && rm SPEM_1.20.0.tar.gz SPEM_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 156k 100 156k 0 0 2624k 0 --:--:-- --:--:-- --:--:-- 2951k install for i386 * installing *source* package 'SPEM' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SPEM' finding HTML links ... done SPEM-package html SPEM html row_optimize html s_diff html sos html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'SPEM' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SPEM' as SPEM_1.20.0.zip * DONE (SPEM) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'SPEM' successfully unpacked and MD5 sums checked In R CMD INSTALL
SPEM.Rcheck/examples_i386/SPEM-Ex.timings
|
SPEM.Rcheck/examples_x64/SPEM-Ex.timings
|