Alex J. Cornish
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/SANTA |
| Branch: RELEASE_3_7 |
| Last Commit: e7f53a2 |
| Last Changed Date: 2018-04-30 10:35:29 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:37:00 -0400 (Wed, 17 Oct 2018).
| Package 1313/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SANTA 2.18.0 Alex J. Cornish
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: SANTA |
| Version: 2.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SANTA_2.18.0.tar.gz && rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SANTA.buildbin-libdir SANTA_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SANTA_2.18.0.zip && rm SANTA_2.18.0.tar.gz SANTA_2.18.0.zip |
| StartedAt: 2018-10-16 18:51:00 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:52:23 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 82.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SANTA_2.18.0.tar.gz && rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SANTA.buildbin-libdir SANTA_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SANTA_2.18.0.zip && rm SANTA_2.18.0.tar.gz SANTA_2.18.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3759k 100 3759k 0 0 43.9M 0 --:--:-- --:--:-- --:--:-- 47.6M
install for i386
* installing *source* package 'SANTA' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computenetK_fewzeros.c -o computenetK_fewzeros.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function 'computenetK_manyzeros':
computenetK_manyzeros.c:29:24: warning: assignment from incompatible pointer type
p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int));
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computenodeAUK.c -o computenodeAUK.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computeweights.c -o computeweights.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SANTA.dll tmp.def computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/SANTA.buildbin-libdir/SANTA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SANTA'
finding HTML links ... done
BinGraph html
Compactness html
CreateGrid html
DistGraph html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOYLURc/R.INSTALL1698321c6a05/SANTA/man/DistGraph.Rd:53: file link 'shortest.paths' in package 'igraph' does not exist and so has been treated as a topic
GraphDiffusion html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOYLURc/R.INSTALL1698321c6a05/SANTA/man/GraphDiffusion.Rd:45: file link 'shortest.paths' in package 'igraph' does not exist and so has been treated as a topic
GraphMFPT html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOYLURc/R.INSTALL1698321c6a05/SANTA/man/GraphMFPT.Rd:46: file link 'shortest.paths' in package 'igraph' does not exist and so has been treated as a topic
Knet html
Knode html
SANTA.data html
SpreadHits html
plot.Knet html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'SANTA' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computenetK_fewzeros.c -o computenetK_fewzeros.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function 'computenetK_manyzeros':
computenetK_manyzeros.c:29:24: warning: assignment from incompatible pointer type
p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int));
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computenodeAUK.c -o computenodeAUK.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computeweights.c -o computeweights.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SANTA.dll tmp.def computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/SANTA.buildbin-libdir/SANTA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SANTA' as SANTA_2.18.0.zip
* DONE (SANTA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SANTA' successfully unpacked and MD5 sums checked
In R CMD INSTALL