Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:33:56 -0400 (Wed, 17 Oct 2018).
Package 1274/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RpsiXML 2.22.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: RpsiXML |
Version: 2.22.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RpsiXML_2.22.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.22.0.zip && rm RpsiXML_2.22.0.tar.gz RpsiXML_2.22.0.zip |
StartedAt: 2018-10-16 18:55:55 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 18:57:48 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 113.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RpsiXML_2.22.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.22.0.zip && rm RpsiXML_2.22.0.tar.gz RpsiXML_2.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2052k 100 2052k 0 0 21.6M 0 --:--:-- --:--:-- --:--:-- 23.3M install for i386 * installing *source* package 'RpsiXML' ... ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' Note: in method for 'head' with signature 'x="ANY"': expanding the signature to include omitted arguments in definition: x = "missing" Note: in method for 'tail' with signature 'x="ANY"': expanding the signature to include omitted arguments in definition: x = "missing" ** help *** installing help indices converting help for package 'RpsiXML' finding HTML links ... done BIOGRID.PSIMI25 html availableXrefs-methods html availableXrefs html bait html buildPCHypergraph html complexName html complexes html eListHandler html getAbstractByPMID html graphSpeciesConverter html interactionType html interactions html interactorInfo-methods html interactorInfo html interactors html list2Matrix html null2na html numInteractions-methods html parsePsimi25Interaction html psimi25Attribute-class html psimi25Complex-class html psimi25ComplexEntry-class html psimi25Experiment-class html psimi25Graph-class html psimi25Hypergraph-class html psimi25Hypergraph2GraphNEL html psimi25Interaction-class html psimi25InteractionEntry-class html psimi25Interactor-class html psimi25Source-class html psimi25XML2Graph html separateXMLDataByExpt html sourceId-methods html taxId-methods html translateID-methods html translateID html uniprot-methods html uniprot html validatePSIMI25 html ** building package indices ** installing vignettes ** testing if installed package can be loaded No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' In R CMD INSTALL install for x64 * installing *source* package 'RpsiXML' ... ** testing if installed package can be loaded No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML' No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML' * MD5 sums packaged installation of 'RpsiXML' as RpsiXML_2.22.0.zip * DONE (RpsiXML) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'RpsiXML' successfully unpacked and MD5 sums checked In R CMD INSTALL