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INSTALL report for RpsiXML on tokay2

This page was generated on 2018-10-17 08:33:56 -0400 (Wed, 17 Oct 2018).

Package 1274/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.22.0
Jitao David Zhang
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/RpsiXML
Branch: RELEASE_3_7
Last Commit: 040c6ba
Last Changed Date: 2018-04-30 10:35:09 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RpsiXML
Version: 2.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RpsiXML_2.22.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.22.0.zip && rm RpsiXML_2.22.0.tar.gz RpsiXML_2.22.0.zip
StartedAt: 2018-10-16 18:55:55 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:57:48 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 113.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RpsiXML_2.22.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.22.0.zip && rm RpsiXML_2.22.0.tar.gz RpsiXML_2.22.0.zip
###
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install for i386

* installing *source* package 'RpsiXML' ...
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
Note: in method for 'head' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for 'tail' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
  converting help for package 'RpsiXML'
    finding HTML links ... done
    BIOGRID.PSIMI25                         html  
    availableXrefs-methods                  html  
    availableXrefs                          html  
    bait                                    html  
    buildPCHypergraph                       html  
    complexName                             html  
    complexes                               html  
    eListHandler                            html  
    getAbstractByPMID                       html  
    graphSpeciesConverter                   html  
    interactionType                         html  
    interactions                            html  
    interactorInfo-methods                  html  
    interactorInfo                          html  
    interactors                             html  
    list2Matrix                             html  
    null2na                                 html  
    numInteractions-methods                 html  
    parsePsimi25Interaction                 html  
    psimi25Attribute-class                  html  
    psimi25Complex-class                    html  
    psimi25ComplexEntry-class               html  
    psimi25Experiment-class                 html  
    psimi25Graph-class                      html  
    psimi25Hypergraph-class                 html  
    psimi25Hypergraph2GraphNEL              html  
    psimi25Interaction-class                html  
    psimi25InteractionEntry-class           html  
    psimi25Interactor-class                 html  
    psimi25Source-class                     html  
    psimi25XML2Graph                        html  
    separateXMLDataByExpt                   html  
    sourceId-methods                        html  
    taxId-methods                           html  
    translateID-methods                     html  
    translateID                             html  
    uniprot-methods                         html  
    uniprot                                 html  
    validatePSIMI25                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
In R CMD INSTALL

install for x64

* installing *source* package 'RpsiXML' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
* MD5 sums
packaged installation of 'RpsiXML' as RpsiXML_2.22.0.zip
* DONE (RpsiXML)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'RpsiXML' successfully unpacked and MD5 sums checked
In R CMD INSTALL