Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:33:12 -0400 (Wed, 17 Oct 2018).
Package 1244/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Ringo 1.44.0 J. Toedling
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Ringo |
Version: 1.44.0 |
Command: rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.44.0.tar.gz |
StartedAt: 2018-10-17 06:54:12 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 06:54:44 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 31.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: Ringo_1.44.0.zip |
PackageFileSize: 2.139 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.44.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'Ringo' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c mmeansd.cpp -o mmeansd.o mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)': mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable] int * x, nval, hs, is, i; ^ C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c mmedian.cpp -o mmedian.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c region_overlap.c -o region_overlap.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ringo_init.c -o ringo_init.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'ls' from package 'base' in package 'Ringo' ** help *** installing help indices converting help for package 'Ringo' finding HTML links ... done Ringo-internal html arrayImage html asExprSet html autocorr html cherByThreshold html cherClass html chipAlongChrom html chipAlongChromOld html computeRunningMedians html compute_gc html compute_sliding_t html corrPlot html exportCherList html extractProbeAnno html features2Probes html findChersOnSmoothed html ftr2xys html getFeats html newCER html nimblegenNorm html nonzero html plotAutocorr html plotBM html plot_cher html posToProbeAnnoEnvironment html preprocess html probeAnnoClass html qopS4 html quantilesOverPositions html readNimblegen html regionoverlap html relateCERs html sigGOTable html sliding_meansd html sliding_quantile html twoGaussiansNull html upperBoundNull html validProbeAnno html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'Ringo' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c mmeansd.cpp -o mmeansd.o mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)': mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable] int * x, nval, hs, is, i; ^ C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c mmedian.cpp -o mmedian.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c region_overlap.c -o region_overlap.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ringo_init.c -o ringo_init.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Ringo' as Ringo_1.44.0.zip * DONE (Ringo) In R CMD INSTALL In R CMD INSTALL