Package: RedeR

Version: 1.28.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.28.0.tar.gz

StartedAt: 2018-10-16 23:35:56 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 23:36:41 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 45.2 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.28.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/RedeR.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.7-bioc/meat/RedeR.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)

name	user	system	elapsed
RedPort-class	0.006	0.000	0.006
RedPort	0.002	0.000	0.002
RedeR.data	0.428	0.022	0.452
addEdgeBetweenContainers	0.021	0.001	0.022
addEdges	0.015	0.001	0.017
addGraph	0.016	0.001	0.017
addLegend	0.014	0.000	0.015
addNodes	0.015	0.000	0.016
addSeries	0.026	0.002	0.029
addSubgraph	0.013	0.001	0.014
addSubgraph.list	0.011	0.001	0.012
att	0.046	0.003	0.049
calld	0.008	0.001	0.009
cea	0.015	0.002	0.016
deSelectEdges	0.010	0.000	0.011
deSelectGraph	0.013	0.000	0.014
deSelectNodes	0.019	0.000	0.020
deleteEdges	0.010	0.000	0.011
deleteNodes	0.009	0.001	0.010
deleteSelectedEdges	0.011	0.001	0.011
deleteSelectedNodes	0.015	0.001	0.016
duplicateGraph	0.012	0.001	0.012
exitd	0.001	0.000	0.002
getContainerComponets	0.013	0.001	0.015
getEdgeIDs	0.014	0.001	0.016
getEdges	0.015	0.001	0.015
getGraph	0.010	0.001	0.010
getNodeIDs	0.015	0.000	0.015
getNodes	0.011	0.001	0.011
getSourceEdgeIDs	0.012	0.001	0.013
getTargetEdgeIDs	0.012	0.000	0.013
gtoy.rm	0.001	0.000	0.001
isDynamicsActive	0.002	0.000	0.002
mergeNodes	0.013	0.001	0.013
mergeOutEdges	0.016	0.001	0.018
nestNodes	0.015	0.001	0.016
nesthc	1.343	0.075	1.439
ping	0.002	0.000	0.002
relax	0.017	0.001	0.018
resetd	0.003	0.000	0.002
selectAllEdges	0.013	0.001	0.013
selectAllNodes	0.013	0.002	0.014
selectEdges	0.014	0.002	0.015
selectGraph	0.011	0.001	0.013
selectNodes	0.015	0.001	0.018
setArrowDirection	0.014	0.001	0.017
subg	0.049	0.005	0.054
updateContainerSize	0.014	0.002	0.015
updateGraph	0.014	0.002	0.015
version	0.002	0.000	0.002