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This page was generated on 2018-10-17 08:51:49 -0400 (Wed, 17 Oct 2018).
Package 1197/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Rchemcpp 2.18.0 Guenter Klambauer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK |
Package: Rchemcpp |
Version: 2.18.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Rchemcpp |
StartedAt: 2018-10-16 15:30:58 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 15:32:26 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 88.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Rchemcpp ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘Rchemcpp’ ... ** libs clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o constant.o constant.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o node.o node.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o atom.o atom.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o bond.o bond.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o cerror.o cerror.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o chemcpp.o chemcpp.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o datacontainer.o datacontainer.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o descriptor.o descriptor.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o elements.o elements.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o jlpioutils.o jlpioutils.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o kcfmolecule.o kcfmolecule.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o molecule.o molecule.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o moleculeset.o moleculeset.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o moleculeutils.o moleculeutils.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o ring.o ring.cpp clang++ -Wall -g -O2 -w -fPIC -I../src/ -c -o stringutils.o stringutils.cpp clang++ -shared -o ../../libchemcpp.dll -Wall -g -O2 -w -fPIC -I../src/ constant.o node.o atom.o bond.o cerror.o chemcpp.o datacontainer.o descriptor.o elements.o jlpioutils.o kcfmolecule.o molecule.o moleculeset.o moleculeutils.o ring.o stringutils.o clang++ -dynamiclib -o ../../libchemcpp.so -Wall -g -O2 -w -fPIC -I../src/ constant.o node.o atom.o bond.o cerror.o chemcpp.o datacontainer.o descriptor.o elements.o jlpioutils.o kcfmolecule.o molecule.o moleculeset.o moleculeutils.o ring.o stringutils.o -Wl,-install_name -Wl,@loader_path/libchemcpp.so clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./chemcpp/src -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Relements.cpp -o Relements.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./chemcpp/src -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Rmolecule.cpp -o Rmolecule.o In file included from Rmolecule.cpp:2: ./Rmolecule.h:14:7: warning: 'Rmolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] void addAtom(string aSymbol) ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./chemcpp/src -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Rmoleculeset.cpp -o Rmoleculeset.o In file included from Rmoleculeset.cpp:2: In file included from ./Rmoleculeset.h:8: ./Rmolecule.h:14:7: warning: 'Rmolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] void addAtom(string aSymbol) ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ In file included from Rmoleculeset.cpp:2: In file included from ./Rmoleculeset.h:10: In file included from ./chemcpp/src/moleculeset.h:39: ./chemcpp/src/kcfmolecule.h:61:16: warning: 'KCFMolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] virtual Atom* addAtom(string aSymbol) throw( CError ); ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ 2 warnings generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./chemcpp/src -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c spectrum3Dhelper.cpp -o spectrum3Dhelper.o In file included from spectrum3Dhelper.cpp:32: In file included from ./spectrum3Dhelper.h:38: In file included from ./Rmoleculeset.h:8: ./Rmolecule.h:14:7: warning: 'Rmolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] void addAtom(string aSymbol) ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ In file included from spectrum3Dhelper.cpp:32: In file included from ./spectrum3Dhelper.h:38: In file included from ./Rmoleculeset.h:10: In file included from ./chemcpp/src/moleculeset.h:39: ./chemcpp/src/kcfmolecule.h:61:16: warning: 'KCFMolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] virtual Atom* addAtom(string aSymbol) throw( CError ); ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ 2 warnings generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./chemcpp/src -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c spectrumhelper.cpp -o spectrumhelper.o In file included from spectrumhelper.cpp:32: In file included from ./spectrumhelper.h:38: In file included from ./Rmoleculeset.h:8: ./Rmolecule.h:14:7: warning: 'Rmolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] void addAtom(string aSymbol) ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ In file included from spectrumhelper.cpp:32: In file included from ./spectrumhelper.h:38: In file included from ./Rmoleculeset.h:10: In file included from ./chemcpp/src/moleculeset.h:39: ./chemcpp/src/kcfmolecule.h:61:16: warning: 'KCFMolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] virtual Atom* addAtom(string aSymbol) throw( CError ); ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ 2 warnings generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./chemcpp/src -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c subtreehelper.cpp -o subtreehelper.o In file included from subtreehelper.cpp:32: In file included from ./subtreehelper.h:37: In file included from ./Rmoleculeset.h:8: ./Rmolecule.h:14:7: warning: 'Rmolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] void addAtom(string aSymbol) ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ In file included from subtreehelper.cpp:32: In file included from ./subtreehelper.h:37: In file included from ./Rmoleculeset.h:10: In file included from ./chemcpp/src/moleculeset.h:39: ./chemcpp/src/kcfmolecule.h:61:16: warning: 'KCFMolecule::addAtom' hides overloaded virtual function [-Woverloaded-virtual] virtual Atom* addAtom(string aSymbol) throw( CError ); ^ ./chemcpp/src/molecule.h:133:16: note: hidden overloaded virtual function 'Molecule::addAtom' declared here: different number of parameters (2 vs 1) virtual Atom* addAtom( string aSymbol, bool resetSSSR = true ) throw( CError ); ^ subtreehelper.cpp:59:6: warning: unused variable 'depth' [-Wunused-variable] int depth = -1; ^ subtreehelper.cpp:138:6: warning: unused variable 'depth' [-Wunused-variable] int depth = -1; ^ 4 warnings generated. clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Rchemcpp.so Relements.o Rmolecule.o Rmoleculeset.o spectrum3Dhelper.o spectrumhelper.o subtreehelper.o -L./ -lchemcpp -Wl,-rpath,/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rchemcpp/libs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rchemcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘length’ with signature ‘"Rcpp_Rmoleculeset"’: no definition for class “Rcpp_Rmoleculeset” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rchemcpp)