RProtoBufLib 1.2.0
Mike Jiang
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/RProtoBufLib |
| Branch: RELEASE_3_7 |
| Last Commit: 370e3ba |
| Last Changed Date: 2018-04-30 10:35:47 -0400 (Mon, 30 Apr 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL RProtoBufLib
###
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘RProtoBufLib’ ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
untarring protobuf ...
building protobuf...
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
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checking for stdlib.h... yes
checking for string.h... yes
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checking minix/config.h usability... no
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checking C++ compiler flags...... use user-supplied: -g -O2 -Wall
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checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
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checking for archiver @FILE support... @
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checking command to parse /usr/bin/nm -B output from gcc object... ok
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
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checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
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checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
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checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
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checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
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checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
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checking limits.h usability... yes
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checking zlib version... ok (1.2.0.4 or later)
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checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking whether to check for GCC pthread/shared inconsistencies... yes
checking whether -pthread is sufficient with -shared... yes
checking whether what we have so far is sufficient with -nostdlib... no
checking whether -lpthread saves the day... yes
checking the location of hash_map... <tr1/unordered_map>
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating protobuf.pc
config.status: creating protobuf-lite.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
Making install in .
make[1]: Entering directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0'
make[2]: Entering directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0'
make[1]: Leaving directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0'
Making install in src
make[1]: Entering directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0/src'
depbase=`echo google/protobuf/stubs/atomicops_internals_x86_gcc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/atomicops_internals_x86_gcc.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/atomicops_internals_x86_gcc.lo google/protobuf/stubs/atomicops_internals_x86_gcc.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/atomicops_internals_x86_gcc.lo -MD -MP -MF google/protobuf/stubs/.deps/atomicops_internals_x86_gcc.Tpo -c google/protobuf/stubs/atomicops_internals_x86_gcc.cc -fPIC -DPIC -o google/protobuf/stubs/atomicops_internals_x86_gcc.o
depbase=`echo google/protobuf/stubs/atomicops_internals_x86_msvc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/atomicops_internals_x86_msvc.lo -MD -MP -MF google/protobuf/stubs/.deps/atomicops_internals_x86_msvc.Tpo -c google/protobuf/stubs/atomicops_internals_x86_msvc.cc -fPIC -DPIC -o google/protobuf/stubs/atomicops_internals_x86_msvc.o
depbase=`echo google/protobuf/stubs/common.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/common.lo -MD -MP -MF google/protobuf/stubs/.deps/common.Tpo -c google/protobuf/stubs/common.cc -fPIC -DPIC -o google/protobuf/stubs/common.o
depbase=`echo google/protobuf/stubs/once.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/once.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/once.lo google/protobuf/stubs/once.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/once.lo -MD -MP -MF google/protobuf/stubs/.deps/once.Tpo -c google/protobuf/stubs/once.cc -fPIC -DPIC -o google/protobuf/stubs/once.o
depbase=`echo google/protobuf/stubs/stringprintf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/stringprintf.lo google/protobuf/stubs/stringprintf.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF google/protobuf/stubs/.deps/stringprintf.Tpo -c google/protobuf/stubs/stringprintf.cc -fPIC -DPIC -o google/protobuf/stubs/stringprintf.o
In file included from ./google/protobuf/stubs/stringprintf.h:47:0,
from google/protobuf/stubs/stringprintf.cc:33:
google/protobuf/stubs/stringprintf.cc: In function 'std::__cxx11::string google::protobuf::StringPrintfVector(const char*, const std::vector<std::__cxx11::basic_string<char> >&)':
google/protobuf/stubs/stringprintf.cc:164:59: warning: typedef 'arg_count_mismatch' locally defined but not used [-Wunused-local-typedefs]
GOOGLE_COMPILE_ASSERT(kStringPrintfVectorMaxArgs == 32, arg_count_mismatch);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
depbase=`echo google/protobuf/extension_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/extension_set.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/extension_set.lo google/protobuf/extension_set.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/extension_set.lo -MD -MP -MF google/protobuf/.deps/extension_set.Tpo -c google/protobuf/extension_set.cc -fPIC -DPIC -o google/protobuf/extension_set.o
In file included from google/protobuf/extension_set.cc:43:0:
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
depbase=`echo google/protobuf/generated_message_util.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/generated_message_util.lo -MD -MP -MF google/protobuf/.deps/generated_message_util.Tpo -c google/protobuf/generated_message_util.cc -fPIC -DPIC -o google/protobuf/generated_message_util.o
depbase=`echo google/protobuf/message_lite.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/message_lite.lo -MD -MP -MF google/protobuf/.deps/message_lite.Tpo -c google/protobuf/message_lite.cc -fPIC -DPIC -o google/protobuf/message_lite.o
depbase=`echo google/protobuf/repeated_field.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/repeated_field.lo -MD -MP -MF google/protobuf/.deps/repeated_field.Tpo -c google/protobuf/repeated_field.cc -fPIC -DPIC -o google/protobuf/repeated_field.o
depbase=`echo google/protobuf/wire_format_lite.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/wire_format_lite.lo -MD -MP -MF google/protobuf/.deps/wire_format_lite.Tpo -c google/protobuf/wire_format_lite.cc -fPIC -DPIC -o google/protobuf/wire_format_lite.o
depbase=`echo google/protobuf/io/coded_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/coded_stream.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/coded_stream.lo google/protobuf/io/coded_stream.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/coded_stream.lo -MD -MP -MF google/protobuf/io/.deps/coded_stream.Tpo -c google/protobuf/io/coded_stream.cc -fPIC -DPIC -o google/protobuf/io/coded_stream.o
depbase=`echo google/protobuf/io/zero_copy_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/zero_copy_stream.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream.Tpo -c google/protobuf/io/zero_copy_stream.cc -fPIC -DPIC -o google/protobuf/io/zero_copy_stream.o
depbase=`echo google/protobuf/io/zero_copy_stream_impl_lite.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/zero_copy_stream_impl_lite.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream_impl_lite.Tpo -c google/protobuf/io/zero_copy_stream_impl_lite.cc -fPIC -DPIC -o google/protobuf/io/zero_copy_stream_impl_lite.o
depbase=`echo google/protobuf/stubs/strutil.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/strutil.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/strutil.lo google/protobuf/stubs/strutil.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/strutil.lo -MD -MP -MF google/protobuf/stubs/.deps/strutil.Tpo -c google/protobuf/stubs/strutil.cc -fPIC -DPIC -o google/protobuf/stubs/strutil.o
In file included from ./google/protobuf/stubs/strutil.h:38:0,
from google/protobuf/stubs/strutil.cc:33:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
google/protobuf/stubs/strutil.cc: In function 'char* google::protobuf::DoubleToBuffer(double, char*)':
google/protobuf/stubs/strutil.cc:1172:39: warning: typedef 'DBL_DIG_is_too_big' locally defined but not used [-Wunused-local-typedefs]
GOOGLE_COMPILE_ASSERT(DBL_DIG < 20, DBL_DIG_is_too_big);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
google/protobuf/stubs/strutil.cc: In function 'char* google::protobuf::FloatToBuffer(float, char*)':
google/protobuf/stubs/strutil.cc:1227:39: warning: typedef 'FLT_DIG_is_too_big' locally defined but not used [-Wunused-local-typedefs]
GOOGLE_COMPILE_ASSERT(FLT_DIG < 10, FLT_DIG_is_too_big);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
depbase=`echo google/protobuf/stubs/substitute.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/substitute.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/substitute.lo google/protobuf/stubs/substitute.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/substitute.lo -MD -MP -MF google/protobuf/stubs/.deps/substitute.Tpo -c google/protobuf/stubs/substitute.cc -fPIC -DPIC -o google/protobuf/stubs/substitute.o
In file included from ./google/protobuf/stubs/substitute.h:35:0,
from google/protobuf/stubs/substitute.cc:33:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
depbase=`echo google/protobuf/stubs/structurally_valid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/structurally_valid.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/structurally_valid.lo google/protobuf/stubs/structurally_valid.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/stubs/structurally_valid.lo -MD -MP -MF google/protobuf/stubs/.deps/structurally_valid.Tpo -c google/protobuf/stubs/structurally_valid.cc -fPIC -DPIC -o google/protobuf/stubs/structurally_valid.o
depbase=`echo google/protobuf/descriptor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/descriptor.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/descriptor.lo google/protobuf/descriptor.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/descriptor.lo -MD -MP -MF google/protobuf/.deps/descriptor.Tpo -c google/protobuf/descriptor.cc -fPIC -DPIC -o google/protobuf/descriptor.o
In file included from ./google/protobuf/stubs/hash.h:39:0,
from google/protobuf/descriptor.cc:35:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
In file included from google/protobuf/descriptor.cc:59:0:
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
depbase=`echo google/protobuf/descriptor.pb.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/descriptor.pb.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/descriptor.pb.lo google/protobuf/descriptor.pb.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/descriptor.pb.lo -MD -MP -MF google/protobuf/.deps/descriptor.pb.Tpo -c google/protobuf/descriptor.pb.cc -fPIC -DPIC -o google/protobuf/descriptor.pb.o
depbase=`echo google/protobuf/descriptor_database.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/descriptor_database.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/descriptor_database.lo google/protobuf/descriptor_database.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/descriptor_database.lo -MD -MP -MF google/protobuf/.deps/descriptor_database.Tpo -c google/protobuf/descriptor_database.cc -fPIC -DPIC -o google/protobuf/descriptor_database.o
In file included from ./google/protobuf/descriptor_database.h:44:0,
from google/protobuf/descriptor_database.cc:35:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
In file included from google/protobuf/descriptor_database.cc:43:0:
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
depbase=`echo google/protobuf/dynamic_message.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/dynamic_message.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/dynamic_message.lo google/protobuf/dynamic_message.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/dynamic_message.lo -MD -MP -MF google/protobuf/.deps/dynamic_message.Tpo -c google/protobuf/dynamic_message.cc -fPIC -DPIC -o google/protobuf/dynamic_message.o
depbase=`echo google/protobuf/extension_set_heavy.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/extension_set_heavy.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/extension_set_heavy.lo google/protobuf/extension_set_heavy.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/extension_set_heavy.lo -MD -MP -MF google/protobuf/.deps/extension_set_heavy.Tpo -c google/protobuf/extension_set_heavy.cc -fPIC -DPIC -o google/protobuf/extension_set_heavy.o
depbase=`echo google/protobuf/generated_message_reflection.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/generated_message_reflection.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/generated_message_reflection.lo google/protobuf/generated_message_reflection.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/generated_message_reflection.lo -MD -MP -MF google/protobuf/.deps/generated_message_reflection.Tpo -c google/protobuf/generated_message_reflection.cc -fPIC -DPIC -o google/protobuf/generated_message_reflection.o
google/protobuf/generated_message_reflection.cc: In member function 'void google::protobuf::internal::GeneratedMessageReflection::SwapOneofField(google::protobuf::Message*, google::protobuf::Message*, const google::protobuf::OneofDescriptor*) const':
google/protobuf/generated_message_reflection.cc:503:54: warning: 'field1' may be used uninitialized in this function [-Wmaybe-uninitialized]
SetField<TYPE>(message2, field1, temp_##TYPE); \
^
google/protobuf/generated_message_reflection.cc:516:60: warning: 'temp_message' may be used uninitialized in this function [-Wmaybe-uninitialized]
SetAllocatedMessage(message2, temp_message, field1);
^
depbase=`echo google/protobuf/message.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/message.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/message.lo google/protobuf/message.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/message.lo -MD -MP -MF google/protobuf/.deps/message.Tpo -c google/protobuf/message.cc -fPIC -DPIC -o google/protobuf/message.o
In file included from ./google/protobuf/stubs/hash.h:39:0,
from google/protobuf/message.cc:37:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
In file included from google/protobuf/message.cc:51:0:
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
depbase=`echo google/protobuf/reflection_ops.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/reflection_ops.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/reflection_ops.lo google/protobuf/reflection_ops.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/reflection_ops.lo -MD -MP -MF google/protobuf/.deps/reflection_ops.Tpo -c google/protobuf/reflection_ops.cc -fPIC -DPIC -o google/protobuf/reflection_ops.o
In file included from ./google/protobuf/reflection_ops.h:41:0,
from google/protobuf/reflection_ops.cc:38:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
depbase=`echo google/protobuf/service.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/service.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/service.lo google/protobuf/service.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/service.lo -MD -MP -MF google/protobuf/.deps/service.Tpo -c google/protobuf/service.cc -fPIC -DPIC -o google/protobuf/service.o
depbase=`echo google/protobuf/text_format.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/text_format.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/text_format.lo google/protobuf/text_format.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/text_format.lo -MD -MP -MF google/protobuf/.deps/text_format.Tpo -c google/protobuf/text_format.cc -fPIC -DPIC -o google/protobuf/text_format.o
In file included from ./google/protobuf/text_format.h:46:0,
from google/protobuf/text_format.cc:43:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
In file included from google/protobuf/text_format.cc:54:0:
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
./google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
typedef typename Collection::value_type value_type;
^
depbase=`echo google/protobuf/unknown_field_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/unknown_field_set.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/unknown_field_set.lo google/protobuf/unknown_field_set.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/unknown_field_set.lo -MD -MP -MF google/protobuf/.deps/unknown_field_set.Tpo -c google/protobuf/unknown_field_set.cc -fPIC -DPIC -o google/protobuf/unknown_field_set.o
depbase=`echo google/protobuf/wire_format.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/wire_format.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/wire_format.lo google/protobuf/wire_format.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/wire_format.lo -MD -MP -MF google/protobuf/.deps/wire_format.Tpo -c google/protobuf/wire_format.cc -fPIC -DPIC -o google/protobuf/wire_format.o
depbase=`echo google/protobuf/io/gzip_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/gzip_stream.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/gzip_stream.lo google/protobuf/io/gzip_stream.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/gzip_stream.lo -MD -MP -MF google/protobuf/io/.deps/gzip_stream.Tpo -c google/protobuf/io/gzip_stream.cc -fPIC -DPIC -o google/protobuf/io/gzip_stream.o
depbase=`echo google/protobuf/io/printer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/printer.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/printer.lo google/protobuf/io/printer.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/printer.lo -MD -MP -MF google/protobuf/io/.deps/printer.Tpo -c google/protobuf/io/printer.cc -fPIC -DPIC -o google/protobuf/io/printer.o
depbase=`echo google/protobuf/io/strtod.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/strtod.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/strtod.lo google/protobuf/io/strtod.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/strtod.lo -MD -MP -MF google/protobuf/io/.deps/strtod.Tpo -c google/protobuf/io/strtod.cc -fPIC -DPIC -o google/protobuf/io/strtod.o
depbase=`echo google/protobuf/io/tokenizer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/tokenizer.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/tokenizer.lo google/protobuf/io/tokenizer.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/tokenizer.lo -MD -MP -MF google/protobuf/io/.deps/tokenizer.Tpo -c google/protobuf/io/tokenizer.cc -fPIC -DPIC -o google/protobuf/io/tokenizer.o
In file included from ./google/protobuf/io/tokenizer.h:42:0,
from google/protobuf/io/tokenizer.cc:91:
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
./google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
./google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
sizeof_uint64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
msg[bool(expr) ? 1 : -1]
^
depbase=`echo google/protobuf/io/zero_copy_stream_impl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/zero_copy_stream_impl.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/zero_copy_stream_impl.lo google/protobuf/io/zero_copy_stream_impl.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -MT google/protobuf/io/zero_copy_stream_impl.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream_impl.Tpo -c google/protobuf/io/zero_copy_stream_impl.cc -fPIC -DPIC -o google/protobuf/io/zero_copy_stream_impl.o
/bin/bash ../libtool --tag=CXX --mode=link g++ -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -Wall -version-info 9:0:0 -export-dynamic -no-undefined -o libprotobuf.la -rpath /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib google/protobuf/stubs/atomicops_internals_x86_gcc.lo google/protobuf/stubs/atomicops_internals_x86_msvc.lo google/protobuf/stubs/common.lo google/protobuf/stubs/once.lo google/protobuf/stubs/stringprintf.lo google/protobuf/extension_set.lo google/protobuf/generated_message_util.lo google/protobuf/message_lite.lo google/protobuf/repeated_field.lo google/protobuf/wire_format_lite.lo google/protobuf/io/coded_stream.lo google/protobuf/io/zero_copy_stream.lo google/protobuf/io/zero_copy_stream_impl_lite.lo google/protobuf/stubs/strutil.lo google/protobuf/stubs/substitute.lo google/protobuf/stubs/structurally_valid.lo google/protobuf/descriptor.lo google/protobuf/descriptor.pb.lo google/protobuf/descriptor_database.lo google/protobuf/dynamic_message.lo google/protobuf/extension_set_heavy.lo google/protobuf/generated_message_reflection.lo google/protobuf/message.lo google/protobuf/reflection_ops.lo google/protobuf/service.lo google/protobuf/text_format.lo google/protobuf/unknown_field_set.lo google/protobuf/wire_format.lo google/protobuf/io/gzip_stream.lo google/protobuf/io/printer.lo google/protobuf/io/strtod.lo google/protobuf/io/tokenizer.lo google/protobuf/io/zero_copy_stream_impl.lo -lpthread -lz
libtool: link: ar cru .libs/libprotobuf.a google/protobuf/stubs/atomicops_internals_x86_gcc.o google/protobuf/stubs/atomicops_internals_x86_msvc.o google/protobuf/stubs/common.o google/protobuf/stubs/once.o google/protobuf/stubs/stringprintf.o google/protobuf/extension_set.o google/protobuf/generated_message_util.o google/protobuf/message_lite.o google/protobuf/repeated_field.o google/protobuf/wire_format_lite.o google/protobuf/io/coded_stream.o google/protobuf/io/zero_copy_stream.o google/protobuf/io/zero_copy_stream_impl_lite.o google/protobuf/stubs/strutil.o google/protobuf/stubs/substitute.o google/protobuf/stubs/structurally_valid.o google/protobuf/descriptor.o google/protobuf/descriptor.pb.o google/protobuf/descriptor_database.o google/protobuf/dynamic_message.o google/protobuf/extension_set_heavy.o google/protobuf/generated_message_reflection.o google/protobuf/message.o google/protobuf/reflection_ops.o google/protobuf/service.o google/protobuf/text_format.o google/protobuf/unknown_field_set.o google/protobuf/wire_format.o google/protobuf/io/gzip_stream.o google/protobuf/io/printer.o google/protobuf/io/strtod.o google/protobuf/io/tokenizer.o google/protobuf/io/zero_copy_stream_impl.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libprotobuf.a
libtool: link: ( cd ".libs" && rm -f "libprotobuf.la" && ln -s "../libprotobuf.la" "libprotobuf.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0/src'
/bin/mkdir -p '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib'
/bin/bash ../libtool --mode=install /usr/bin/install -c libprotobuf.la '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib'
libtool: install: /usr/bin/install -c .libs/libprotobuf.lai /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.la
libtool: install: /usr/bin/install -c .libs/libprotobuf.a /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a
libtool: install: chmod 644 /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a
libtool: install: ranlib /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a
libtool: finish: PATH="/usr/bin:/bin:/usr/local/bin:/snap/bin:/usr/local/root/bin:/usr/local/ensembl-vep-release-94:/sbin" ldconfig -n /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib
----------------------------------------------------------------------
Libraries have been installed in:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the '-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the 'LD_RUN_PATH' environment variable
during linking
- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to '/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/mkdir -p '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include'
/bin/mkdir -p '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
/usr/bin/install -c -m 644 google/protobuf/descriptor.h google/protobuf/descriptor.pb.h google/protobuf/descriptor_database.h google/protobuf/dynamic_message.h google/protobuf/extension_set.h google/protobuf/generated_enum_reflection.h google/protobuf/generated_message_util.h google/protobuf/generated_message_reflection.h google/protobuf/message.h google/protobuf/message_lite.h google/protobuf/reflection_ops.h google/protobuf/repeated_field.h google/protobuf/service.h google/protobuf/text_format.h google/protobuf/unknown_field_set.h google/protobuf/wire_format.h google/protobuf/wire_format_lite.h google/protobuf/wire_format_lite_inl.h '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
/bin/mkdir -p '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs'
/usr/bin/install -c -m 644 google/protobuf/stubs/atomicops.h google/protobuf/stubs/atomicops_internals_arm_gcc.h google/protobuf/stubs/atomicops_internals_arm64_gcc.h google/protobuf/stubs/atomicops_internals_arm_qnx.h google/protobuf/stubs/atomicops_internals_atomicword_compat.h google/protobuf/stubs/atomicops_internals_generic_gcc.h google/protobuf/stubs/atomicops_internals_macosx.h google/protobuf/stubs/atomicops_internals_mips_gcc.h google/protobuf/stubs/atomicops_internals_pnacl.h google/protobuf/stubs/atomicops_internals_tsan.h google/protobuf/stubs/atomicops_internals_x86_gcc.h google/protobuf/stubs/atomicops_internals_x86_msvc.h google/protobuf/stubs/common.h google/protobuf/stubs/platform_macros.h google/protobuf/stubs/once.h google/protobuf/stubs/stl_util.h google/protobuf/stubs/template_util.h google/protobuf/stubs/type_traits.h '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs'
/bin/mkdir -p '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io'
/usr/bin/install -c -m 644 google/protobuf/io/coded_stream.h google/protobuf/io/gzip_stream.h google/protobuf/io/printer.h google/protobuf/io/strtod.h google/protobuf/io/tokenizer.h google/protobuf/io/zero_copy_stream.h google/protobuf/io/zero_copy_stream_impl.h google/protobuf/io/zero_copy_stream_impl_lite.h '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io'
make[2]: Leaving directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0/src'
make[1]: Leaving directory '/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/protobuf-2.6.0/src'
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I../inst/include/ -I/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/ -I/usr/local/include -fpic -g -O2 -Wall -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o
In file included from GatingSet_pb_lib/GatingSet.pb.cc:12:0:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h: In instantiation of ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = unsigned int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)7u]’:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:413:1: required from here
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h: In instantiation of ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long unsigned int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)6u]’:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:414:1: required from here
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h: In instantiation of ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)15u]’:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:415:1: required from here
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h: In instantiation of ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)16u]’:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:416:1: required from here
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h: In instantiation of ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = float; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)2u]’:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:417:1: required from here
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h: In instantiation of ‘static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = double; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)1u]’:
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:418:1: required from here
/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
mkdir -p "/home/biocbuild/bbs-3.7-bioc/R/library/RProtoBufLib/include"
cp -r /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/google /home/biocbuild/bbs-3.7-bioc/R/library/RProtoBufLib/include
mkdir -p "/home/biocbuild/bbs-3.7-bioc/R/library/RProtoBufLib/lib/"
cp /home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/lib/* /home/biocbuild/bbs-3.7-bioc/R/library/RProtoBufLib/lib/
cp GatingSet_pb_lib/GatingSet.pb.o /home/biocbuild/bbs-3.7-bioc/R/library/RProtoBufLib/lib//GatingSet.pb.o
g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I../inst/include/ -I/home/biocbuild/bbs-3.7-bioc/meat/RProtoBufLib/src/pb_build/include/ -I/usr/local/include -fpic -g -O2 -Wall -c dummy.cpp -o dummy.o
g++ -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o RProtoBufLib.so dummy.o -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.7-bioc/R/library/RProtoBufLib/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RProtoBufLib)