Markus Riester
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/PureCN |
| Branch: RELEASE_3_7 |
| Last Commit: 21a4b58 |
| Last Changed Date: 2018-04-30 10:35:41 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:13 -0400 (Wed, 17 Oct 2018).
| Package 1149/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PureCN 1.10.0 Markus Riester
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: PureCN |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/PureCN_1.10.0.tar.gz && rm -rf PureCN.buildbin-libdir && mkdir PureCN.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PureCN.buildbin-libdir PureCN_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL PureCN_1.10.0.zip && rm PureCN_1.10.0.tar.gz PureCN_1.10.0.zip |
| StartedAt: 2018-10-16 20:07:32 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:09:17 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 105.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/PureCN_1.10.0.tar.gz && rm -rf PureCN.buildbin-libdir && mkdir PureCN.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PureCN.buildbin-libdir PureCN_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL PureCN_1.10.0.zip && rm PureCN_1.10.0.tar.gz PureCN_1.10.0.zip
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install for i386
* installing *source* package 'PureCN' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PureCN'
finding HTML links ... done
PureCN-defunct html
PureCN-deprecated html
annotateTargets html
bootstrapResults html
calculateBamCoverageByInterval html
calculateGCContentByInterval html
calculateLogRatio html
calculateMappingBiasVcf html
calculatePowerDetectSomatic html
calculateTangentNormal html
callAlterations html
callAlterationsFromSegmentation html
callLOH html
callMutationBurden html
centromeres html
correctCoverageBias html
createCurationFile html
createNormalDatabase html
createTargetWeights html
filterTargets html
filterVcfBasic html
filterVcfMuTect html
filterVcfMuTect2 html
findBestNormal html
findFocal html
getSexFromCoverage html
getSexFromVcf html
plotAbs html
plotBestNormal html
poolCoverage html
predictSomatic html
preprocessIntervals html
purecn.DNAcopy.bdry html
purecn.example.output html
readCoverageFile html
readCurationFile html
runAbsoluteCN html
segmentationCBS html
segmentationPSCBS html
setMappingBiasVcf html
setPriorVcf html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'PureCN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PureCN' as PureCN_1.10.0.zip
* DONE (PureCN)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'PureCN' successfully unpacked and MD5 sums checked
In R CMD INSTALL