Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:37:43 -0400 (Wed, 17 Oct 2018).
Package 1129/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ProCoNA 1.18.0 David L Gibbs
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: ProCoNA |
Version: 1.18.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ProCoNA_1.18.0.tar.gz && rm -rf ProCoNA.buildbin-libdir && mkdir ProCoNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProCoNA.buildbin-libdir ProCoNA_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ProCoNA_1.18.0.zip && rm ProCoNA_1.18.0.tar.gz ProCoNA_1.18.0.zip |
StartedAt: 2018-10-16 20:28:54 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 20:30:13 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 78.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ProCoNA_1.18.0.tar.gz && rm -rf ProCoNA.buildbin-libdir && mkdir ProCoNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProCoNA.buildbin-libdir ProCoNA_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ProCoNA_1.18.0.zip && rm ProCoNA_1.18.0.tar.gz ProCoNA_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2414k 100 2414k 0 0 28.5M 0 --:--:-- --:--:-- --:--:-- 31.0M install for i386 * installing *source* package 'ProCoNA' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ========================================================================== * * Package WGCNA 1.64.1 loaded. * * Important note: It appears that your system supports multi-threading, * but it is not enabled within WGCNA in R. * To allow multi-threading within WGCNA with all available cores, use * * allowWGCNAThreads() * * within R. Use disableWGCNAThreads() to disable threading if necessary. * Alternatively, set the following environment variable on your system: * * ALLOW_WGCNA_THREADS=<number_of_processors> * * for example * * ALLOW_WGCNA_THREADS=20 * * To set the environment variable in linux bash shell, type * * export ALLOW_WGCNA_THREADS=20 * * before running R. Other operating systems or shells will * have a similar command to achieve the same aim. * ========================================================================== Note: possible error in 'pickSoftThreshold.fromSimilarity(adj(pnet), ': unused argument (networkType = networkType) ** help *** installing help indices converting help for package 'ProCoNA' finding HTML links ... done MMvsPS html MMvsPSallModules html ProCoNA_Data html accessors html bootstrapProconaNetwork html buildProconaNetwork html c2i html compareNetworksWithFishersExactTest html compareNetworksWithFishersExactTestProcona html corBootstrap html correlationWithPhenotypesHeatMap html getFisherMatrix html getPeptideNAs html goStatTest html hclust html i2c html i2col html moduleMemberCorrelations html modulePhenotypeCorrelations html orderMatrixIndex html peptideConnectivityTest html peptideCorrelationTest html plotNet html ppiPermTest html printNet html procona-package html proconaNet-class html proconaVersionFun html runningStats html subsetModCors html subsetPeptideData html toPermTest html utri html ** building package indices ** installing vignettes ** testing if installed package can be loaded ========================================================================== * * Package WGCNA 1.64.1 loaded. * * Important note: It appears that your system supports multi-threading, * but it is not enabled within WGCNA in R. * To allow multi-threading within WGCNA with all available cores, use * * allowWGCNAThreads() * * within R. Use disableWGCNAThreads() to disable threading if necessary. * Alternatively, set the following environment variable on your system: * * ALLOW_WGCNA_THREADS=<number_of_processors> * * for example * * ALLOW_WGCNA_THREADS=20 * * To set the environment variable in linux bash shell, type * * export ALLOW_WGCNA_THREADS=20 * * before running R. Other operating systems or shells will * have a similar command to achieve the same aim. * ========================================================================== In R CMD INSTALL install for x64 * installing *source* package 'ProCoNA' ... ** testing if installed package can be loaded ========================================================================== * * Package WGCNA 1.64.1 loaded. * * Important note: It appears that your system supports multi-threading, * but it is not enabled within WGCNA in R. * To allow multi-threading within WGCNA with all available cores, use * * allowWGCNAThreads() * * within R. Use disableWGCNAThreads() to disable threading if necessary. * Alternatively, set the following environment variable on your system: * * ALLOW_WGCNA_THREADS=<number_of_processors> * * for example * * ALLOW_WGCNA_THREADS=20 * * To set the environment variable in linux bash shell, type * * export ALLOW_WGCNA_THREADS=20 * * before running R. Other operating systems or shells will * have a similar command to achieve the same aim. * ========================================================================== * MD5 sums packaged installation of 'ProCoNA' as ProCoNA_1.18.0.zip * DONE (ProCoNA) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'ProCoNA' successfully unpacked and MD5 sums checked In R CMD INSTALL