Package: Pi

Version: 1.8.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.8.0.tar.gz

StartedAt: 2018-10-16 23:14:22 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 23:21:06 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 403.3 seconds

RetCode: 0

Status:  OK

CheckDir: Pi.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pi.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pi_1.8.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/Pi.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Pi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Pi’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Pi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Pi
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘Pi’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Pi)

name	user	system	elapsed
cTarget	0.002	0.000	0.003
dTarget	0.002	0.000	0.003
eGSEA	0.002	0.001	0.002
eTarget	0.001	0.000	0.001
pNode	0.002	0.000	0.001
pPerf	0.002	0.000	0.002
sGS	0.002	0.000	0.002
sTarget	0.001	0.000	0.002
xContour	0.037	0.001	0.038
xGSEAbarplot	0.001	0.000	0.002
xGSEAconciser	0.001	0.000	0.002
xGSEAdotplot	0.003	0.001	0.003
xGSsimulator	0.002	0.000	0.003
xMLcaret	0.002	0.001	0.003
xMLcompare	0.002	0.000	0.003
xMLdensity	0.001	0.000	0.001
xMLdotplot	0.002	0.000	0.002
xMLfeatureplot	0.002	0.000	0.002
xMLglmnet	0.001	0.000	0.002
xMLparameters	0.002	0.000	0.003
xMLrandomforest	0.001	0.001	0.001
xMLrename	0.002	0.000	0.002
xMLzoom	0.002	0.000	0.003
xPCHiCplot	0.004	0.000	0.004
xPieplot	0.002	0.001	0.002
xPier	0.004	0.000	0.004
xPierAnno	0.004	0.000	0.005
xPierCor	0.002	0.001	0.002
xPierCross	0.003	0.000	0.002
xPierEvidence	0.002	0.001	0.002
xPierGRs	0.004	0.000	0.004
xPierGSEA	0.003	0.001	0.004
xPierGenes	0.003	0.001	0.003
xPierKEGG	0.003	0.000	0.003
xPierManhattan	0.004	0.001	0.004
xPierMatrix	0.001	0.000	0.002
xPierPathways	0.004	0.001	0.004
xPierROCR	0.002	0.000	0.002
xPierSNPs	0.004	0.000	0.004
xPierSNPsAdv	0.003	0.000	0.002
xPierSNPsConsensus	0.004	0.000	0.004
xPierSubnet	0.004	0.001	0.005
xPierTrack	0.004	0.000	0.004
xPierTrackAdv	0.003	0.000	0.003
xPredictCompare	0.003	0.000	0.003
xPredictROCR	0.001	0.000	0.001
xRWR	0.004	0.000	0.004
xSNP2cGenes	0.003	0.000	0.003
xSNP2eGenes	0.002	0.000	0.002
xSNPeqtl	0.003	0.000	0.003
xSNPhic	0.003	0.001	0.004
xVisEvidence	0.002	0.000	0.003
xVisEvidenceAdv	0.001	0.001	0.001