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CHECK report for PharmacoGx on malbec2

This page was generated on 2018-10-17 08:29:19 -0400 (Wed, 17 Oct 2018).

Package 1085/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PharmacoGx 1.10.3
Benjamin Haibe-Kains
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/PharmacoGx
Branch: RELEASE_3_7
Last Commit: 6a270be
Last Changed Date: 2018-07-25 10:55:17 -0400 (Wed, 25 Jul 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PharmacoGx
Version: 1.10.3
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:PharmacoGx.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings PharmacoGx_1.10.3.tar.gz
StartedAt: 2018-10-16 02:40:08 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 02:50:48 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 640.5 seconds
RetCode: 0
Status:  OK 
CheckDir: PharmacoGx.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:PharmacoGx.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings PharmacoGx_1.10.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/PharmacoGx.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PharmacoGx/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PharmacoGx’ version ‘1.10.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PharmacoGx’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 2251 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
intersectPSet 2.304  0.904 128.643
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.7-bioc/meat/PharmacoGx.Rcheck/00check.log’
for details.



Installation output

PharmacoGx.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL PharmacoGx
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘PharmacoGx’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PharmacoGx)

Tests output

PharmacoGx.Rcheck/tests/testthat.Rout


R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.unsetenv("R_TESTS")
> 
> library(testthat)
> library(PharmacoGx)
> 
> test_check("PharmacoGx")
[1] NA  3
[1]   1   2 Inf
[1] NA  3
[1]   1   2 Inf

  |                                                                            
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  |                                                                            
  |======================================================================| 100%

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  |======================================================================| 100%
[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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8 1 
[1] "Model did not converge"

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8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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0 1 
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0 1 
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0 1 
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[1] "Model did not converge"

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0 1 
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0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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0 1 
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0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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0 1 
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[1] "Model did not converge"

0 1 
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0 1 
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0 1 
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0 1 
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0 1 
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0 1 
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[1] "Model did not converge"

0 1 
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0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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0 1 
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[1] "Model did not converge"

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0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
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[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
2 7 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
1 8 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
3 6 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
6 3 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
4 5 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
5 4 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
8 1 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 
[1] "Model did not converge"

0 1 
7 2 

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
[1]  1  1 -1
[1] 0
[1] 0
             [,1] [,2] [,3]
lower_bounds    0    0    0
upper_bounds    1    1   -1

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%

  |                                                                            
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  |======================================================================| 100%
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 142 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
125.916   8.272 387.926 

Example timings

PharmacoGx.Rcheck/PharmacoGx-Ex.timings

nameusersystemelapsed
LogLogisticRegression0.6960.0520.746
PharmacoSet0.0040.0000.003
amcc1.0080.0681.071
availablePSets0.0040.0000.000
cellInfo-set0.6600.0120.675
cellInfo0.8400.0520.893
cellNames-set0.9200.0120.932
cellNames0.6520.0040.655
checkPSetStructure0.6720.0000.671
computeABC0.8160.0600.871
computeAUC0.4160.0520.465
computeAmax0.4440.0200.460
computeICn1.0720.0881.146
computeSlope0.0000.0000.002
connectivityScore0.0520.0080.059
cosinePerm0.0560.0000.057
dateCreated0.7400.0040.748
downloadPSet000
downloadPertSig000
drugDoseResponseCurve0.0000.0000.001
drugInfo-set0.6520.0040.656
drugInfo0.6680.0080.678
drugNames-set0.6800.0000.678
drugNames0.8960.0000.895
drugPerturbationSig2.0800.1362.208
drugSensitivitySig1.1160.1001.230
fNames0.6960.0080.709
featureInfo-set0.6880.0040.690
featureInfo0.7320.0080.740
filterNoisyCurves0.9400.0681.016
gwc0.8080.0000.811
intersectList0.0000.0000.001
intersectPSet 2.304 0.904128.643
mDataNames0.6760.0040.682
mcc1.9360.0962.015
molecularProfiles-set0.6800.0040.683
molecularProfiles1.1440.1961.341
pSetName0.7280.0000.731
pertNumber-set0.8960.0360.933
pertNumber0.6760.0000.676
phenoInfo-set0.6880.0000.688
phenoInfo1.0960.0961.193
sensNumber-set0.6840.0040.687
sensNumber0.7320.0520.782
sensitivityInfo-set0.8840.0040.887
sensitivityInfo1.3800.1961.580
sensitivityMeasures0.7280.0080.737
sensitivityProfiles-set0.6960.0120.708
sensitivityProfiles1.1840.1921.373
show-PharmacoSet-method0.740.000.74
show-PharmacoSig-method1.1240.1281.256
showSigAnnot1.1960.1281.348
subsetTo0.8080.0120.820
summarizeMolecularProfiles0.0960.0120.111
summarizeSensitivityProfiles0.0360.0080.044
symSetDiffList0.0040.0000.001
unionList000