Package: PAnnBuilder

Version: 1.43.0

Command: rm -rf PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && mkdir PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PAnnBuilder.buildbin-libdir PAnnBuilder_1.43.0.tar.gz >PAnnBuilder.Rcheck\00install.out 2>&1 && cp PAnnBuilder.Rcheck\00install.out PAnnBuilder-install.out && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --library=PAnnBuilder.buildbin-libdir --install="check:PAnnBuilder-install.out" --force-multiarch --no-vignettes --timings PAnnBuilder_1.43.0.tar.gz

StartedAt: 2017-12-04 20:39:59 -0500 (Mon, 04 Dec 2017)

EndedAt: 2017-12-04 20:41:49 -0500 (Mon, 04 Dec 2017)

EllapsedTime: 109.7 seconds

RetCode: 0

Status:  OK

CheckDir: PAnnBuilder.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && mkdir PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PAnnBuilder.buildbin-libdir PAnnBuilder_1.43.0.tar.gz >PAnnBuilder.Rcheck\00install.out 2>&1 && cp PAnnBuilder.Rcheck\00install.out PAnnBuilder-install.out  &&  C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --library=PAnnBuilder.buildbin-libdir --install="check:PAnnBuilder-install.out" --force-multiarch --no-vignettes --timings PAnnBuilder_1.43.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/PAnnBuilder.Rcheck'
* using R Under development (unstable) (2017-10-30 r73642)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PAnnBuilder/DESCRIPTION' ... OK
* this is package 'PAnnBuilder' version '1.43.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PAnnBuilder' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods' 'utils' 'Biobase' 'RSQLite' 'AnnotationDbi'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'Biobase' which was already attached by Depends.
  Please remove these calls from your code.
':::' calls which should be '::':
  'AnnotationDbi:::as.list' 'base:::get' 'tools:::list_files_with_type'
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
  'AnnotationDbi:::createAnnDbBimaps'
  'AnnotationDbi:::prefixAnnObjNames' 'tools:::makeLazyLoadDB'
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'getShortSciName' 'twoStepSplit'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'PAnnBuilder/R/zzz.R':
  .onLoad calls:
    require(Biobase)

Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.7-bioc/meat/PAnnBuilder.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'PAnnBuilder' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'PAnnBuilder' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PAnnBuilder' as PAnnBuilder_1.43.0.zip
* DONE (PAnnBuilder)
In R CMD INSTALL
In R CMD INSTALL