Multiple platform build/check report for BioC 3.7 - CHECK report for OmicsMarkeR on merida2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OmicsMarkeR_1.12.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/OmicsMarkeR.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmicsMarkeR/DESCRIPTION’ ... OK
* this is package ‘OmicsMarkeR’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmicsMarkeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
perm.class          14.427  0.437  14.986
perm.features       13.386  0.460  13.996
performance.metrics 13.297  0.396  13.853
fs.stability        13.298  0.364  13.820
feature.table       12.849  0.622  13.603
predictNewClasses   12.956  0.445  13.487
fit.only.model       4.805  0.312   5.156
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL OmicsMarkeR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘OmicsMarkeR’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OmicsMarkeR)

Tests output


R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(OmicsMarkeR)
> 
> test_check("OmicsMarkeR")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 100 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
 79.011   1.942  81.701

Example timings

name	user	system	elapsed
RPT	0.005	0.001	0.008
aggregation	0.008	0.001	0.009
canberra	0.002	0.000	0.002
canberra_stability	0.002	0.000	0.003
create.corr.matrix	0.009	0.002	0.011
create.discr.matrix	0.010	0.002	0.013
create.random.matrix	0.007	0.002	0.010
denovo.grid	0.013	0.003	0.016
feature.table	12.849	0.622	13.603
fit.only.model	4.805	0.312	5.156
fs.ensembl.stability	0.001	0.000	0.001
fs.stability	13.298	0.364	13.820
jaccard	0.002	0.000	0.002
kuncheva	0.003	0.000	0.003
modelList	0.002	0.001	0.003
ochiai	0.003	0.000	0.003
pairwise.model.stability	0.017	0.001	0.017
pairwise.stability	0.009	0.000	0.010
params	0.005	0.001	0.004
performance.metrics	13.297	0.396	13.853
perm.class	14.427	0.437	14.986
perm.features	13.386	0.460	13.996
pof	0.002	0.000	0.003
predictNewClasses	12.956	0.445	13.487
sorensen	0.002	0.000	0.002
spearman	0.002	0.000	0.002
svmrfeFeatureRanking	0.062	0.000	0.063
svmrfeFeatureRankingForMulticlass	0.152	0.006	0.157

CHECK report for OmicsMarkeR on merida2

Summary

Command output

Installation output

Tests output

Example timings