Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:35:50 -0400 (Wed, 17 Oct 2018).
Package 931/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MmPalateMiRNA 1.30.0 Guy Brock
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: MmPalateMiRNA |
Version: 1.30.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MmPalateMiRNA.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings MmPalateMiRNA_1.30.0.tar.gz |
StartedAt: 2018-10-17 03:27:21 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 03:28:48 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 86.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: MmPalateMiRNA.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MmPalateMiRNA.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings MmPalateMiRNA_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/MmPalateMiRNA.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MmPalateMiRNA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MmPalateMiRNA' version '1.30.0' * checking package namespace information ... OK * checking package dependencies ... NOTE Depends: includes the non-default packages: 'Biobase' 'xtable' 'limma' 'statmod' 'lattice' 'vsn' Adding so many packages to the search path is excessive and importing selectively is preferable. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MmPalateMiRNA' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MAplot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MAplot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: file link 'lattice-package' in package 'lattice' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkMVs.Rd:9: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkMVs.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkMVs.Rd:22: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkOutliers.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkOutliers.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkOutliers.Rd:23: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:32: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:33: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:34: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:40: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:44: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:51: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:60: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:61: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/filterArray.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/filterArray.Rd:12: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/filterArray.Rd:26: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/filterArray.Rd:57: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:37: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:38: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:39: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:45: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:59: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:68: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/levelplot.Rd:69: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/MmPalateMiRNA.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'limma' 'lattice' 'Biobase' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'methods' 'statmod' 'vsn' 'xtable' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE clustPlot: no visible global function definition for 'par' clustPlot: no visible global function definition for 'plot' clustPlot: no visible global function definition for 'axis' clustPlot: no visible global function definition for 'lines' clustPlot: no visible global function definition for 'legend' fixOutliers : <anonymous>: no visible global function definition for 'sd' imputeKNN: no visible global function definition for 'sd' imputeKNN: no visible global function definition for 'cor' MADvsMedianPlot,list : <anonymous>: no visible global function definition for 'RG.MA' MADvsMedianPlot,list : <anonymous>: no visible global function definition for 'assayData' MADvsMedianPlot,list : <anonymous>: no visible binding for global variable 'mad' MADvsMedianPlot,list : <anonymous>: no visible binding for global variable 'median' MADvsMedianPlot,list: no visible global function definition for 'stack' MADvsMedianPlot,list : <anonymous>: no visible global function definition for 'pData' MADvsMedianPlot,list : <anonymous>: no visible global function definition for 'featureData' MAplot,MAList: no visible global function definition for 'stack' MAplot,NChannelSet: no visible global function definition for 'assayData' MAplot,NChannelSet: no visible global function definition for 'stack' checkOutliers,RGList: no visible binding for global variable 'sd' densityplot,RGList-missing: no visible global function definition for 'as.formula' densityplot,list-missing : <anonymous>: no visible global function definition for 'RG.MA' densityplot,list-missing : <anonymous>: no visible global function definition for 'assayData' densityplot,list-missing : <anonymous>: no visible global function definition for 'pData' densityplot,list-missing : <anonymous>: no visible global function definition for 'featureData' densityplot,list-missing: no visible global function definition for 'as.formula' levelplot,RGList-missing: no visible global function definition for 'median' levelplot,list-missing : <anonymous>: no visible global function definition for 'RG.MA' levelplot,list-missing : <anonymous>: no visible global function definition for 'assayData' levelplot,list-missing: no visible global function definition for 'median' Undefined global functions or variables: RG.MA as.formula assayData axis cor featureData legend lines mad median pData par plot sd stack Consider adding importFrom("graphics", "axis", "legend", "lines", "par", "plot") importFrom("stats", "as.formula", "cor", "mad", "median", "sd") importFrom("utils", "stack") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 4 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/MmPalateMiRNA.Rcheck/00check.log' for details.
MmPalateMiRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/MmPalateMiRNA_1.30.0.tar.gz && rm -rf MmPalateMiRNA.buildbin-libdir && mkdir MmPalateMiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MmPalateMiRNA.buildbin-libdir MmPalateMiRNA_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL MmPalateMiRNA_1.30.0.zip && rm MmPalateMiRNA_1.30.0.tar.gz MmPalateMiRNA_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 506k 100 506k 0 0 8566k 0 --:--:-- --:--:-- --:--:-- 9565k install for i386 * installing *source* package 'MmPalateMiRNA' ... ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MmPalateMiRNA' finding HTML links ... done MADvsMedianPlot html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic MAplot html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MAplot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MAplot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic MmPalateMiRNA-package html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: file link 'lattice-package' in package 'lattice' does not exist and so has been treated as a topic PalateData html finding level-2 HTML links ... done checkMVs html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkMVs.Rd:9: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkMVs.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkMVs.Rd:22: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic checkOutliers html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkOutliers.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkOutliers.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/checkOutliers.Rd:23: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic clustPlot html densityplot html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:32: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:33: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:34: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:40: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:44: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:51: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:60: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/densityplot.Rd:61: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic filterArray html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/filterArray.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOo3MFG/R.INSTALL1a28771827e8/MmPalateMiRNA/man/filterArray.Rd:12: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic Rd warning: 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package 'Biobase' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'MmPalateMiRNA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MmPalateMiRNA' as MmPalateMiRNA_1.30.0.zip * DONE (MmPalateMiRNA) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'MmPalateMiRNA' successfully unpacked and MD5 sums checked In R CMD INSTALL
MmPalateMiRNA.Rcheck/examples_i386/MmPalateMiRNA-Ex.timings
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MmPalateMiRNA.Rcheck/examples_x64/MmPalateMiRNA-Ex.timings
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