Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:36:57 -0400 (Wed, 17 Oct 2018).
Package 907/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MineICA 1.20.0 Anne Biton
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: MineICA |
Version: 1.20.0 |
Command: rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.20.0.tar.gz |
StartedAt: 2018-10-17 06:40:59 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 06:41:52 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 53.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: MineICA_1.20.0.zip |
PackageFileSize: 2.247 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.20.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'MineICA' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'sampleNames<-' in package 'MineICA' ** help *** installing help indices converting help for package 'MineICA' finding HTML links ... done A html Alist html Slist html addGenesToGoReport html annot2Color html annotCarbayo html annotFeatures html annotFeaturesComp html annotFeaturesWithBiomaRt html annotInGene html annotReciprocal html buildIcaSet html buildMineICAParams html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/buildMineICAParams.Rd:50: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/buildMineICAParams.Rd:54: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/buildMineICAParams.Rd:67: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic build_sortHeatmap html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/build_sortHeatmap.Rd:45: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic class-IcaSet html finding level-2 HTML links ... done class-MineICAParams html clusVarAnalysis html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/clusVarAnalysis.Rd:16: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/clusVarAnalysis.Rd:19: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic clusterFastICARuns html clusterSamplesByComp html clusterSamplesByComp_multiple html compareAn html compareAn2graphfile html compareGenes html cor2An html correl2Comp html dat html dataCarbayo html doEnrichment html getComp html getProj html getSdExpr html hgOver html hypergeoAn html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/hypergeoAn.Rd:53: file link 'GOstats' in package 'GOstats' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/hypergeoAn.Rd:14: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic icaSetCarbayo html icaSetKim html icaSetRiester html icaSetStransky html indComp html mergeGostatsResults html nbOccByGeneInComp html nbOccInComp html nbOccInComp_simple html nodeAttrs html plotAllMix html plotCorGraph html plotDens2classInComp_plotOnly html plotDensAllAnnotInAllComp html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotDensAllAnnotInAllComp.Rd:14: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotDensAllAnnotInAllComp.Rd:17: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic plotDensOneAnnotInAllComp html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotDensOneAnnotInAllComp.Rd:12: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic plotMclust html plotMix html plotPosAnnotInComp html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotPosAnnotInComp.Rd:80: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic plotPosOneAnnotInComp_ggplot html plotPosOneAnnotLevInComp_ggplot html plotPosSamplesInComp html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotPosSamplesInComp.Rd:60: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotPosSamplesInComp.Rd:22: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/plotPosSamplesInComp.Rd:101: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic plot_heatmapsOnSel html qualVarAnalysis html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/qualVarAnalysis.Rd:17: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/qualVarAnalysis.Rd:21: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic quantVarAnalysis html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/quantVarAnalysis.Rd:17: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/quantVarAnalysis.Rd:21: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic readA html readS html relativePath html runAn html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/runAn.Rd:22: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/runAn.Rd:26: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic runCompareIcaSets html runEnrich html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/runEnrich.Rd:11: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/runEnrich.Rd:14: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic runICA html selectContrib html selectFeatures_IQR html selectWitnessGenes html wilcoxOrKruskalOnA html writeGenes html writeGostatsHtmltable html writeHtmlResTestsByAnnot html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/writeHtmlResTestsByAnnot.Rd:14: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKsdmmA/R.INSTALL262c24105586/MineICA/man/writeHtmlResTestsByAnnot.Rd:18: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic writeProjByComp html writeRnkFiles html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'MineICA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MineICA' as MineICA_1.20.0.zip * DONE (MineICA) In R CMD INSTALL In R CMD INSTALL