Thomas Naake
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/MetCirc |
| Branch: RELEASE_3_7 |
| Last Commit: a65d52f |
| Last Changed Date: 2018-04-30 10:35:42 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:56:43 -0400 (Wed, 17 Oct 2018).
| Package 880/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MetCirc 1.10.0 Thomas Naake
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: MetCirc |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MetCirc.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MetCirc_1.10.0.tar.gz |
| StartedAt: 2018-10-16 22:32:06 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 22:33:51 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 104.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetCirc.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MetCirc.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MetCirc_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/MetCirc.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MetCirc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MetCirc’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetCirc’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘circlize:::get.sector.data’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allocatePrecursor2mz 8.264 0.341 8.682
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.7-bioc/meat/MetCirc.Rcheck/00check.log’
for details.
MetCirc.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MetCirc ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘MetCirc’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MetCirc)
MetCirc.Rcheck/tests/runTests.Rout
R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(amap)
> library(circlize)
========================================
circlize version 0.4.4
CRAN page: https://cran.r-project.org/package=circlize
Github page: https://github.com/jokergoo/circlize
Documentation: http://jokergoo.github.io/circlize_book/book/
If you use it in published research, please cite:
Gu, Z. circlize implements and enhances circular visualization
in R. Bioinformatics 2014.
========================================
> library(scales)
> library(shiny)
>
> data("sd01_outputXCMS", package = "MetCirc")
> data("sd02_deconvoluted", package = "MetCirc")
> data("binnedMSP", package = "MetCirc")
> data("similarityMat", package = "MetCirc")
>
> BiocGenerics:::testPackage("MetCirc")
[1] "13"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "15"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "16"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "20"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "21"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "23"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "24"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "25"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "26"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "27"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "28"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "29"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "30"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "31"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "32"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "44"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "45"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "46"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "47"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "48"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "49"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "50"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "51"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "52"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "53"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "54"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "54"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "55"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "55"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "56"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "59"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "59"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "60"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "61"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "62"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "63"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "64"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "65"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "66"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "67"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "67"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "68"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "71"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "72"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "73"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "74"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "75"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "76"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "77"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "78"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "79"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "79"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "80"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "81"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "82"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "83"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "84"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "85"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "86"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "89"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "90"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "91"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "92"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "93"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "94"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "95"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "96"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "97"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "98"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "99"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "100"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "101"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "102"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "103"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "103"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "104"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "105"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "106"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "107"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "108"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "109"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "110"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "112"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "113"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "115"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "116"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "118"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "119"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "120"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "121"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "122"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "123"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "124"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "125"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "126"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "127"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "128"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "129"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "130"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "131"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "132"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "133"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "135"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "136"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "137"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "138"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "139"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "140"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "141"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "142"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "143"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "144"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "145"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "146"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "147"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "150"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "151"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "152"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "153"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "154"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "155"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "156"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "157"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "158"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "159"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "160"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "161"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "162"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "163"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "164"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "165"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "166"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "167"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "168"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "169"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "170"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "171"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "172"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "173"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "174"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "175"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "176"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "177"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "177"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "178"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "178"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "179"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "179"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "181"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "182"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "183"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "184"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "185"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "186"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "187"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "188"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "190"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "191"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "192"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "193"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "194"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "195"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "196"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "197"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "198"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "199"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "200"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "201"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "202"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "203"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "204"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "204"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "208"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "209"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "212"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "213"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "214"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "215"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "215"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "216"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "216"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "217"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "217"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "218"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "219"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "222"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "223"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "225"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "226"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "227"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "228"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "229"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "230"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "231"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "232"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "233"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "234"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "235"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "237"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "238"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "240"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "241"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "242"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "243"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "244"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "245"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "246"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "248"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "249"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "250"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "251"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "252"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "254"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "254"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "255"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "256"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "257"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "258"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "259"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "260"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "261"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "262"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "263"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "264"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "265"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "266"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "267"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "268"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "269"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "269"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "270"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "271"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "272"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "272"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "274"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "275"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "276"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "277"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "278"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "278"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "279"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "280"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "281"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "282"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "283"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "284"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "285"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "286"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "287"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "288"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "289"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "290"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "291"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "292"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "292"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "293"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "294"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "295"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "296"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "297"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "298"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "299"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "300"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "301"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "303"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "304"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "305"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "306"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "308"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "309"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "311"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "313"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "314"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "315"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "316"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "316"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "317"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "318"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "319"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "320"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "321"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "322"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "323"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "324"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "325"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "326"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "327"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "328"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "328"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "329"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "330"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "331"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "332"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "333"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "334"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "335"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "336"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "337"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "338"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "339"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "340"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "341"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "342"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "343"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "345"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "346"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "347"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "347"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "348"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "349"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "350"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "351"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "352"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "353"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "354"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "355"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "356"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "357"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "358"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "359"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
[1] "360"
[2] "Deviation of m/z is greater than tolerance value. \n I won't truncate the kNN."
[1] "360"
[2] "Deviation of rt is greater than tolerance value. \n I won't use rt as a criterion."
An object of class MSP with 360 entries.
RUNIT TEST PROTOCOL -- Tue Oct 16 22:33:45 2018
***********************************************
Number of test functions: 39
Number of errors: 0
Number of failures: 0
1 Test Suite :
MetCirc RUnit Tests - 39 test functions, 0 errors, 0 failures
Number of test functions: 39
Number of errors: 0
Number of failures: 0
Warning message:
In warning_wrap("'gap.degree' can only be modified before `circos.initialize`, or maybe you forgot to call `circos.clear` in your last plot.") :
'gap.degree' can only be modified before `circos.initialize`, or maybe
you forgot to call `circos.clear` in your last plot.
>
> proc.time()
user system elapsed
22.174 0.714 23.110
MetCirc.Rcheck/MetCirc-Ex.timings
| name | user | system | elapsed | |
| NDP | 0.046 | 0.005 | 0.052 | |
| adduct-set | 0.372 | 0.049 | 0.426 | |
| adduct | 0.349 | 0.020 | 0.372 | |
| allocatePrecursor2mz | 8.264 | 0.341 | 8.682 | |
| binning | 2.468 | 0.544 | 3.042 | |
| cart2Polar | 0.002 | 0.000 | 0.001 | |
| circosLegend | 0.644 | 0.102 | 0.752 | |
| classes-set | 0.426 | 0.014 | 0.446 | |
| classes | 0.457 | 0.008 | 0.470 | |
| combine | 0.842 | 0.011 | 0.858 | |
| convert2MSP | 0.491 | 0.004 | 0.497 | |
| convertMSP2MSP | 0.025 | 0.001 | 0.026 | |
| createLink0Matrix | 0.209 | 0.006 | 0.215 | |
| createLinkMatrix | 1.206 | 0.101 | 1.323 | |
| createOrderedSimMat | 3.033 | 0.717 | 3.781 | |
| createSimilarityMatrix | 0.094 | 0.011 | 0.106 | |
| cutLinkMatrix | 0.981 | 0.093 | 1.087 | |
| cutUniquePrecursor | 0.001 | 0.000 | 0.002 | |
| extract-methods | 0.378 | 0.007 | 0.391 | |
| getBegEndIndMSP | 0.354 | 0.007 | 0.365 | |
| getLinkMatrixIndices | 0.001 | 0.000 | 0.001 | |
| getPrecursorMZ | 0.384 | 0.007 | 0.393 | |
| getRT | 0.324 | 0.006 | 0.336 | |
| highlight | 2.391 | 0.108 | 2.522 | |
| information-set | 0.307 | 0.011 | 0.320 | |
| information | 0.365 | 0.011 | 0.379 | |
| length-method | 0.350 | 0.013 | 0.364 | |
| minFragCart2Polar | 1.233 | 0.044 | 1.292 | |
| msp2FunctionalLossesMSP | 0.494 | 0.004 | 0.505 | |
| names-set | 0.409 | 0.006 | 0.420 | |
| names | 0.356 | 0.003 | 0.368 | |
| peaks | 0.599 | 0.060 | 0.664 | |
| plotCircos | 2.340 | 0.081 | 2.437 | |
| printInformationSelect | 0.991 | 0.057 | 1.054 | |
| shinyCircos | 0.498 | 0.063 | 0.568 | |
| show-method | 0.375 | 0.014 | 0.396 | |
| thresholdLinkMatrix | 1.061 | 0.080 | 1.162 | |
| truncateName | 0.002 | 0.000 | 0.002 | |