Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:52:31 -0400 (Wed, 17 Oct 2018).
Package 906/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MIMOSA 1.18.0 Greg Finak
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: MIMOSA |
Version: 1.18.0 |
Command: rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MIMOSA.buildbin-libdir |
StartedAt: 2018-10-17 01:41:52 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:42:42 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 50.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: MIMOSA_1.18.0.tgz |
PackageFileSize: 551 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MIMOSA.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MIMOSA.buildbin-libdir MIMOSA_1.18.0.tar.gz' >>>>>>> * installing *source* package ‘MIMOSA’ ... ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -Wall -g -O2 -c BetaMix.cpp -o BetaMix.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -Wall -g -O2 -c MCMC.cpp -o MCMC.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MIMOSA_init.c -o MIMOSA_init.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c betaintegral.c -o betaintegral.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"` -fPIC -Wall -g -O2 -c betaintegralRcpp.cpp -o betaintegralRcpp.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MIMOSA.so BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -O3 -lm -lstdc++ -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/MIMOSA.buildbin-libdir/MIMOSA/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MIMOSA) >>>>>>> >>>>>>> FIXING LINKS FOR MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so"