Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:48:22 -0400 (Wed, 17 Oct 2018).
Package 791/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
LiquidAssociation 1.34.0 Yen-Yi Ho
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: LiquidAssociation |
Version: 1.34.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LiquidAssociation.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LiquidAssociation_1.34.0.tar.gz |
StartedAt: 2018-10-16 22:16:04 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 22:17:32 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 87.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: LiquidAssociation.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LiquidAssociation.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LiquidAssociation_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/LiquidAssociation.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘LiquidAssociation/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘LiquidAssociation’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘LiquidAssociation’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘geepack’ ‘org.Sc.sgd.db’ ‘yeastCC’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CNM.full,matrix: no visible global function definition for ‘geese’ CNM.full,matrix: no visible binding for global variable ‘groupid’ CNM.full,matrix: no visible binding for global variable ‘visit’ CNM.full,matrix: no visible global function definition for ‘geese.control’ CNM.simple,matrix: no visible global function definition for ‘geese’ CNM.simple,matrix: no visible binding for global variable ‘groupid’ CNM.simple,matrix: no visible binding for global variable ‘visit’ CNM.simple,matrix: no visible global function definition for ‘geese.control’ Undefined global functions or variables: geese geese.control groupid visit * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed getsGLA-methods 4.954 0.104 5.075 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.7-bioc/meat/LiquidAssociation.Rcheck/00check.log’ for details.
LiquidAssociation.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LiquidAssociation ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘LiquidAssociation’ ... ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (LiquidAssociation)
LiquidAssociation.Rcheck/LiquidAssociation-Ex.timings
name | user | system | elapsed | |
CNM-class | 0.002 | 0.000 | 0.002 | |
CNM.full-methods | 0.051 | 0.004 | 0.058 | |
CNM.simple-methods | 0.033 | 0.001 | 0.035 | |
GLA-methods | 0.006 | 0.000 | 0.006 | |
LA-methods | 0.003 | 0.001 | 0.003 | |
LiquidAssociation-package | 0.113 | 0.006 | 0.119 | |
getsGLA-methods | 4.954 | 0.104 | 5.075 | |
getsLA-methods | 3.143 | 0.040 | 3.192 | |
plotGLA-methods | 0.030 | 0.001 | 1.041 | |