Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:40:07 -0400 (Wed, 17 Oct 2018).
Package 782/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
LEA 2.2.0 Eric Frichot
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: LEA |
Version: 2.2.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:LEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings LEA_2.2.0.tar.gz |
StartedAt: 2018-10-17 02:56:48 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 03:02:32 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 344.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: LEA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:LEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings LEA_2.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/LEA.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'LEA/DESCRIPTION' ... OK * this is package 'LEA' version '2.2.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'LEA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.7-bioc/R/library/LEA/libs/i386/LEA.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed main_LFMM 95.03 0.06 95.28 lfmm_pvalues 14.86 0.00 14.86 zscores 14.43 0.00 14.42 main_sNMF 12.28 1.18 16.98 readZscore 7.10 0.00 7.09 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed main_LFMM 93.47 0.02 93.87 lfmm_pvalues 15.37 0.01 15.41 zscores 11.92 0.00 11.92 main_sNMF 10.03 1.14 14.62 readZscore 6.77 0.03 6.80 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/LEA.Rcheck/00check.log' for details.
LEA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/LEA_2.2.0.tar.gz && rm -rf LEA.buildbin-libdir && mkdir LEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LEA.buildbin-libdir LEA_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL LEA_2.2.0.zip && rm LEA_2.2.0.tar.gz LEA_2.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 326k 100 326k 0 0 5918k 0 --:--:-- --:--:-- --:--:-- 6805k install for i386 * installing *source* package 'LEA' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_LFMM.c -o R_LFMM.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_crossEntropy.c -o R_crossEntropy.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_createDataSet.c -o R_createDataSet.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_sNMF.c -o R_sNMF.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_ancestrymap2geno.c -o R_ancestrymap2geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_ancestrymap2lfmm.c -o R_ancestrymap2lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_geno2lfmm.c -o R_geno2lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_lfmm2geno.c -o R_lfmm2geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_pca.c -o R_pca.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_ped2geno.c -o R_ped2geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_ped2lfmm.c -o R_ped2lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_vcf2geno.c -o R_vcf2geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_tracyWidom.c -o R_tracyWidom.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_LEA.c -o R_init_LEA.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bituint/bituint.c -o bituint/bituint.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bituint/calc_bituint.c -o bituint/calc_bituint.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bituint/io_geno_bituint.c -o bituint/io_geno_bituint.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bituint/slice_bituint.c -o bituint/slice_bituint.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bituint/thread_bituint.c -o bituint/thread_bituint.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/ancestrymap.c -o convert/ancestrymap.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/geno.c -o convert/geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/ped.c -o convert/ped.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/vcf2geno.c -o convert/vcf2geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/geno2lfmm.c -o convert/geno2lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/lfmm2geno.c -o convert/lfmm2geno.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c convert/register_convert.c -o convert/register_convert.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c createDataSet/createDataSet.c -o createDataSet/createDataSet.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c createDataSet/error_cds.c -o createDataSet/error_cds.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c createDataSet/print_cds.c -o createDataSet/print_cds.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c createDataSet/register_cds.c -o createDataSet/register_cds.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c crossEntropy/crossEntropy.c -o crossEntropy/crossEntropy.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c crossEntropy/error_ce.c -o crossEntropy/error_ce.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c crossEntropy/print_ce.c -o crossEntropy/print_ce.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c crossEntropy/register_ce.c -o crossEntropy/register_ce.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io/io_data_double.c -o io/io_data_double.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io/io_data_float.c -o io/io_data_float.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io/io_data_int.c -o io/io_data_int.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io/io_error.c -o io/io_error.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io/io_tools.c -o io/io_tools.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c io/print_bar.c -o io/print_bar.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/beta.c -o LFMM/beta.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/error_lfmm.c -o LFMM/error_lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/lfmm_k0.c -o LFMM/lfmm_k0.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/slice_lfmm.c -o LFMM/slice_lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/U.c -o LFMM/U.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/beta_k0.c -o LFMM/beta_k0.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/lfmm_algo.c -o LFMM/lfmm_algo.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/print_lfmm.c -o LFMM/print_lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/thread_lfmm.c -o LFMM/thread_lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/V.c -o LFMM/V.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/data_lfmm.c -o LFMM/data_lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/LFMM.c -o LFMM/LFMM.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/register_lfmm.c -o LFMM/register_lfmm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c LFMM/thread_var.c -o LFMM/thread_var.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/cholesky.c -o matrix/cholesky.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/error_matrix.c -o matrix/error_matrix.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/normalize.c -o matrix/normalize.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/slice_matrix.c -o matrix/slice_matrix.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/data.c -o matrix/data.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/inverse.c -o matrix/inverse.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/rand.c -o matrix/rand.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/sylvester.c -o matrix/sylvester.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/diagonalize.c -o matrix/diagonalize.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/matrix.c -o matrix/matrix.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/random_projection.c -o matrix/random_projection.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix/thread_matrix.c -o matrix/thread_matrix.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c nnlsm/blockpivot.c -o nnlsm/blockpivot.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c nnlsm/nnlsm.c -o nnlsm/nnlsm.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c nnlsm/solvenormaleqcomb.c -o nnlsm/solvenormaleqcomb.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c nnlsm/sort.c -o nnlsm/sort.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c pca/calc_cov.c -o pca/calc_cov.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c pca/error_pca.c -o pca/error_pca.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c pca/pca.c -o pca/pca.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c pca/print_pca.c -o pca/print_pca.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c pca/register_pca.c -o pca/register_pca.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/als.c -o sNMF/als.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/als_k1.c -o sNMF/als_k1.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/criteria.c -o sNMF/criteria.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/print_snmf.c -o sNMF/print_snmf.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/sNMF.c -o sNMF/sNMF.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_Q.c -o sNMF/thread_Q.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/als_F.c -o sNMF/als_F.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/als_Q.c -o sNMF/als_Q.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/error_snmf.c -o sNMF/error_snmf.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/register_snmf.c -o sNMF/register_snmf.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_F.c -o sNMF/thread_F.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_snmf.c -o sNMF/thread_snmf.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/beta_distribution.c -o stats/beta_distribution.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/gamma_density.c -o stats/gamma_density.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/ln_beta_function.c -o stats/ln_beta_function.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/beta_function.c -o stats/beta_function.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/gamma_distribution.c -o stats/gamma_distribution.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/ln_gamma_function.c -o stats/ln_gamma_function.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/entire_incomplete_gamma_function.c -o stats/entire_incomplete_gamma_function.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/gamma_dist_tables.c -o stats/gamma_dist_tables.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/student_t_distribution.c -o stats/student_t_distribution.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/factorial.c -o stats/factorial.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stats/gamma_function.c -o stats/gamma_function.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c tracyWidom/error_tracyWidom.c -o tracyWidom/error_tracyWidom.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c tracyWidom/register_tracyWidom.c -o tracyWidom/register_tracyWidom.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c tracyWidom/print_tracyWidom.c -o tracyWidom/print_tracyWidom.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c tracyWidom/tracyWidom.c -o tracyWidom/tracyWidom.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o LEA.dll tmp.def R_LFMM.o R_crossEntropy.o R_createDataSet.o R_sNMF.o R_ancestrymap2geno.o R_ancestrymap2lfmm.o R_geno2lfmm.o R_lfmm2geno.o R_pca.o R_ped2geno.o R_ped2lfmm.o R_vcf2geno.o R_tracyWidom.o R_init_LEA.o bituint/bituint.o bituint/calc_bituint.o bituint/io_geno_bituint.o bituint/slice_bituint.o bituint/thread_bituint.o convert/ancestrymap.o convert/geno.o convert/ped.o convert/vcf2geno.o convert/geno2lfmm.o convert/lfmm2geno.o convert/register_convert.o createDataSet/createDataSet.o createDataSet/error_cds.o createDataSet/print_cds.o createDataSet/register_cds.o crossEntropy/crossEntropy.o crossEntropy/error_ce.o crossEntropy/print_ce.o crossEntropy/register_ce.o io/io_data_double.o io/io_data_float.o io/io_data_int.o io/io_error.o io/io_tools.o io/print_bar.o LFMM/beta.o LFMM/error_lfmm.o LFMM/lfmm_k0.o LFMM/slice_lfmm.o LFMM/U.o LFMM/beta_k0.o LFMM/lfmm_algo.o LFMM/print_lfmm.o LFMM/thread_lfmm.o LFMM/V.o LFMM/data_lfmm.o LFMM/LFMM.o LFMM/register_lfmm.o LFMM/thread_var.o matrix/cholesky.o matrix/error_matrix.o matrix/normalize.o matrix/slice_matrix.o matrix/data.o matrix/inverse.o matrix/rand.o matrix/sylvester.o matrix/diagonalize.o matrix/matrix.o matrix/random_projection.o matrix/thread_matrix.o nnlsm/blockpivot.o nnlsm/nnlsm.o nnlsm/solvenormaleqcomb.o nnlsm/sort.o pca/calc_cov.o pca/error_pca.o pca/pca.o pca/print_pca.o pca/register_pca.o sNMF/als.o sNMF/als_k1.o sNMF/criteria.o sNMF/print_snmf.o sNMF/sNMF.o sNMF/thread_Q.o sNMF/als_F.o sNMF/als_Q.o sNMF/error_snmf.o sNMF/register_snmf.o sNMF/thread_F.o sNMF/thread_snmf.o stats/beta_distribution.o stats/gamma_density.o stats/ln_beta_function.o stats/beta_function.o stats/gamma_distribution.o stats/ln_gamma_function.o stats/entire_incomplete_gamma_function.o stats/gamma_dist_tables.o stats/student_t_distribution.o stats/factorial.o stats/gamma_function.o tracyWidom/error_tracyWidom.o tracyWidom/register_tracyWidom.o tracyWidom/print_tracyWidom.o tracyWidom/tracyWidom.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/LEA.buildbin-libdir/LEA/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'LEA' finding HTML links ... done G html Q html Replop-package html ancestrymap html ancestrymap2geno html ancestrymap2lfmm html barchart html crossEntropy html env html geno html geno2lfmm html impute html lfmm html lfmm2geno html lfmm_pvalues html main_LFMM html main_createDataSet html main_crossEntropyEstimation html main_pca html main_sNMF html main_tracyWidom html ped html ped2geno html ped2lfmm html readEnv html readGeno html readLfmm html readZscore html snmf_pvalues html struct2geno html tutorial html vcf html vcf2geno html vcf2lfmm html writeEnv html writeGeno html writeLFMM html zscore html zscores html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'LEA' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_LFMM.c -o R_LFMM.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_crossEntropy.c -o R_crossEntropy.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_createDataSet.c -o R_createDataSet.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_sNMF.c -o R_sNMF.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_ancestrymap2geno.c -o R_ancestrymap2geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_ancestrymap2lfmm.c -o R_ancestrymap2lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_geno2lfmm.c -o R_geno2lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_lfmm2geno.c -o R_lfmm2geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_pca.c -o R_pca.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_ped2geno.c -o R_ped2geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_ped2lfmm.c -o R_ped2lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_vcf2geno.c -o R_vcf2geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_tracyWidom.c -o R_tracyWidom.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_LEA.c -o R_init_LEA.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/bituint.c -o bituint/bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/calc_bituint.c -o bituint/calc_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/io_geno_bituint.c -o bituint/io_geno_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/slice_bituint.c -o bituint/slice_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/thread_bituint.c -o bituint/thread_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/ancestrymap.c -o convert/ancestrymap.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/geno.c -o convert/geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/ped.c -o convert/ped.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/vcf2geno.c -o convert/vcf2geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/geno2lfmm.c -o convert/geno2lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/lfmm2geno.c -o convert/lfmm2geno.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c convert/register_convert.c -o convert/register_convert.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/createDataSet.c -o createDataSet/createDataSet.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/error_cds.c -o createDataSet/error_cds.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/print_cds.c -o createDataSet/print_cds.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/register_cds.c -o createDataSet/register_cds.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/crossEntropy.c -o crossEntropy/crossEntropy.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/error_ce.c -o crossEntropy/error_ce.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/print_ce.c -o crossEntropy/print_ce.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/register_ce.c -o crossEntropy/register_ce.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_data_double.c -o io/io_data_double.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_data_float.c -o io/io_data_float.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_data_int.c -o io/io_data_int.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_error.c -o io/io_error.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_tools.c -o io/io_tools.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/print_bar.c -o io/print_bar.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/beta.c -o LFMM/beta.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/error_lfmm.c -o LFMM/error_lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/lfmm_k0.c -o LFMM/lfmm_k0.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/slice_lfmm.c -o LFMM/slice_lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/U.c -o LFMM/U.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/beta_k0.c -o LFMM/beta_k0.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/lfmm_algo.c -o LFMM/lfmm_algo.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/print_lfmm.c -o LFMM/print_lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/thread_lfmm.c -o LFMM/thread_lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/V.c -o LFMM/V.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/data_lfmm.c -o LFMM/data_lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/LFMM.c -o LFMM/LFMM.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/register_lfmm.c -o LFMM/register_lfmm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c LFMM/thread_var.c -o LFMM/thread_var.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/cholesky.c -o matrix/cholesky.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/error_matrix.c -o matrix/error_matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/normalize.c -o matrix/normalize.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/slice_matrix.c -o matrix/slice_matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/data.c -o matrix/data.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/inverse.c -o matrix/inverse.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/rand.c -o matrix/rand.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/sylvester.c -o matrix/sylvester.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/diagonalize.c -o matrix/diagonalize.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/matrix.c -o matrix/matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/random_projection.c -o matrix/random_projection.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/thread_matrix.c -o matrix/thread_matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/blockpivot.c -o nnlsm/blockpivot.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/nnlsm.c -o nnlsm/nnlsm.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/solvenormaleqcomb.c -o nnlsm/solvenormaleqcomb.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/sort.c -o nnlsm/sort.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c pca/calc_cov.c -o pca/calc_cov.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c pca/error_pca.c -o pca/error_pca.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c pca/pca.c -o pca/pca.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c pca/print_pca.c -o pca/print_pca.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c pca/register_pca.c -o pca/register_pca.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als.c -o sNMF/als.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als_k1.c -o sNMF/als_k1.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/criteria.c -o sNMF/criteria.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/print_snmf.c -o sNMF/print_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/sNMF.c -o sNMF/sNMF.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_Q.c -o sNMF/thread_Q.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als_F.c -o sNMF/als_F.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als_Q.c -o sNMF/als_Q.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/error_snmf.c -o sNMF/error_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/register_snmf.c -o sNMF/register_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_F.c -o sNMF/thread_F.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_snmf.c -o sNMF/thread_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/beta_distribution.c -o stats/beta_distribution.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_density.c -o stats/gamma_density.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/ln_beta_function.c -o stats/ln_beta_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/beta_function.c -o stats/beta_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_distribution.c -o stats/gamma_distribution.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/ln_gamma_function.c -o stats/ln_gamma_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/entire_incomplete_gamma_function.c -o stats/entire_incomplete_gamma_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_dist_tables.c -o stats/gamma_dist_tables.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/student_t_distribution.c -o stats/student_t_distribution.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/factorial.c -o stats/factorial.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_function.c -o stats/gamma_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c tracyWidom/error_tracyWidom.c -o tracyWidom/error_tracyWidom.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c tracyWidom/register_tracyWidom.c -o tracyWidom/register_tracyWidom.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c tracyWidom/print_tracyWidom.c -o tracyWidom/print_tracyWidom.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I. -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c tracyWidom/tracyWidom.c -o tracyWidom/tracyWidom.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o LEA.dll tmp.def R_LFMM.o R_crossEntropy.o R_createDataSet.o R_sNMF.o R_ancestrymap2geno.o R_ancestrymap2lfmm.o R_geno2lfmm.o R_lfmm2geno.o R_pca.o R_ped2geno.o R_ped2lfmm.o R_vcf2geno.o R_tracyWidom.o R_init_LEA.o bituint/bituint.o bituint/calc_bituint.o bituint/io_geno_bituint.o bituint/slice_bituint.o bituint/thread_bituint.o convert/ancestrymap.o convert/geno.o convert/ped.o convert/vcf2geno.o convert/geno2lfmm.o convert/lfmm2geno.o convert/register_convert.o createDataSet/createDataSet.o createDataSet/error_cds.o createDataSet/print_cds.o createDataSet/register_cds.o crossEntropy/crossEntropy.o crossEntropy/error_ce.o crossEntropy/print_ce.o crossEntropy/register_ce.o io/io_data_double.o io/io_data_float.o io/io_data_int.o io/io_error.o io/io_tools.o io/print_bar.o LFMM/beta.o LFMM/error_lfmm.o LFMM/lfmm_k0.o LFMM/slice_lfmm.o LFMM/U.o LFMM/beta_k0.o LFMM/lfmm_algo.o LFMM/print_lfmm.o LFMM/thread_lfmm.o LFMM/V.o LFMM/data_lfmm.o LFMM/LFMM.o LFMM/register_lfmm.o LFMM/thread_var.o matrix/cholesky.o matrix/error_matrix.o matrix/normalize.o matrix/slice_matrix.o matrix/data.o matrix/inverse.o matrix/rand.o matrix/sylvester.o matrix/diagonalize.o matrix/matrix.o matrix/random_projection.o matrix/thread_matrix.o nnlsm/blockpivot.o nnlsm/nnlsm.o nnlsm/solvenormaleqcomb.o nnlsm/sort.o pca/calc_cov.o pca/error_pca.o pca/pca.o pca/print_pca.o pca/register_pca.o sNMF/als.o sNMF/als_k1.o sNMF/criteria.o sNMF/print_snmf.o sNMF/sNMF.o sNMF/thread_Q.o sNMF/als_F.o sNMF/als_Q.o sNMF/error_snmf.o sNMF/register_snmf.o sNMF/thread_F.o sNMF/thread_snmf.o stats/beta_distribution.o stats/gamma_density.o stats/ln_beta_function.o stats/beta_function.o stats/gamma_distribution.o stats/ln_gamma_function.o stats/entire_incomplete_gamma_function.o stats/gamma_dist_tables.o stats/student_t_distribution.o stats/factorial.o stats/gamma_function.o tracyWidom/error_tracyWidom.o tracyWidom/register_tracyWidom.o tracyWidom/print_tracyWidom.o tracyWidom/tracyWidom.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/LEA.buildbin-libdir/LEA/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'LEA' as LEA_2.2.0.zip * DONE (LEA) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'LEA' successfully unpacked and MD5 sums checked In R CMD INSTALL
LEA.Rcheck/examples_i386/LEA-Ex.timings
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LEA.Rcheck/examples_x64/LEA-Ex.timings
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