Package: IntEREst

Version: 1.4.1

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings IntEREst_1.4.1.tar.gz

StartedAt: 2018-10-16 01:20:12 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 01:24:03 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 231.4 seconds

RetCode: 0

Status:  OK

CheckDir: IntEREst.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings IntEREst_1.4.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/IntEREst.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IntEREst/DESCRIPTION’ ... OK
* this is package ‘IntEREst’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IntEREst’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
DEXSeqIntEREst 26.22  0.068  26.346
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL IntEREst
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘IntEREst’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IntEREst)

name	user	system	elapsed
DEXSeqIntEREst	26.220	0.068	26.346
addAnnotation	0.024	0.000	0.025
annotateU12	2.752	0.016	2.787
attributes	0.036	0.000	0.036
boxplot-method	0.056	0.000	0.056
buildSsTypePwms	0.000	0.000	0.001
counts-method	0.056	0.000	0.057
deseqInterest	1.976	0.016	1.995
exactTestInterest	0.084	0.000	0.087
getRepeatTable	0.004	0.000	0.001
glmInterest	0.128	0.008	0.138
interest	1.488	0.000	1.505
interest.sequential	1.436	0.004	1.444
interestResult	0.012	0.000	0.016
interestResultIntEx	0.116	0.000	0.117
intexIndex	0.004	0.000	0.005
lfc	0.104	0.000	0.104
mergeInterestResult	0.176	0.000	0.176
plot-method	0.264	0.000	0.265
psi	0.748	0.000	0.750
qlfInterest	0.168	0.004	0.170
readInterestResults	0.028	0.000	0.029
referencePrepare	0.820	0.008	0.826
subInterestResult	0.032	0.000	0.033
treatInterest	0.140	0.000	0.139
u12Boxplot	0.064	0.000	0.064
u12BoxplotNb	0.084	0.000	0.086
u12DensityPlot	0.252	0.004	0.259
u12Index	0.008	0.000	0.007
u12NbIndex	0.072	0.004	0.075
unionRefTr	0.016	0.000	0.016
updateRowDataCol	0.024	0.000	0.025