Seonggyun Han
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/IVAS |
| Branch: RELEASE_3_7 |
| Last Commit: 7878acf |
| Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:55 -0400 (Wed, 17 Oct 2018).
| Package 764/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IVAS 2.0.0 Seonggyun Han
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: IVAS |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IVAS_2.0.0.tar.gz && rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IVAS_2.0.0.zip && rm IVAS_2.0.0.tar.gz IVAS_2.0.0.zip |
| StartedAt: 2018-10-16 19:57:06 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:58:02 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 55.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IVAS_2.0.0.tar.gz && rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IVAS_2.0.0.zip && rm IVAS_2.0.0.tar.gz IVAS_2.0.0.zip
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install for i386
* installing *source* package 'IVAS' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: next used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'IVAS'
finding HTML links ... done
ASdb-class html
CalSigSNP html
IVAS-deprecated html
IVAS-package html
MsqtlFinder html
RatioFromFPKM html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGaRCAk/R.INSTALL22cc1a645b9/IVAS/man/RatioFromFPKM.Rd:46: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Splicingfinder html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGaRCAk/R.INSTALL22cc1a645b9/IVAS/man/Splicingfinder.Rd:41: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic
calSignificant html
chrseparate html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGaRCAk/R.INSTALL22cc1a645b9/IVAS/man/chrseparate.Rd:31: file link 'isActiveSeq' in package 'GenomicFeatures' does not exist and so has been treated as a topic
findAlternative html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGaRCAk/R.INSTALL22cc1a645b9/IVAS/man/findAlternative.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGaRCAk/R.INSTALL22cc1a645b9/IVAS/man/findAlternative.Rd:45: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
findOversnp html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGaRCAk/R.INSTALL22cc1a645b9/IVAS/man/findOversnp.Rd:29: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
sQTLsFinder html
sampleexp html
samplesnp html
samplesnplocus html
saveBplot html
sqtlfinder html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'IVAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IVAS' as IVAS_2.0.0.zip
* DONE (IVAS)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'IVAS' successfully unpacked and MD5 sums checked
In R CMD INSTALL