Jeremy Mason
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/IMPCdata |
| Branch: RELEASE_3_7 |
| Last Commit: 09e8fe8 |
| Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:26:53 -0400 (Wed, 17 Oct 2018).
| Package 730/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IMPCdata 1.16.0 Jeremy Mason
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: IMPCdata |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings IMPCdata_1.16.0.tar.gz |
| StartedAt: 2018-10-16 01:16:34 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 01:18:15 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 101.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMPCdata.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings IMPCdata_1.16.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/IMPCdata.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getPhenCenters 1.096 0.088 12.107
getStrains 0.656 0.044 7.372
printStrains 0.640 0.032 6.767
getProcedures 0.508 0.048 5.388
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘IMPCdata’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
| name | user | system | elapsed | |
| getAlleles | 0.596 | 0.044 | 4.887 | |
| getGenes | 0.480 | 0.028 | 4.548 | |
| getIMPCDataset | 0.552 | 0.000 | 3.237 | |
| getIMPCTable | 0.340 | 0.020 | 3.578 | |
| getName | 0.100 | 0.004 | 0.836 | |
| getParameters | 0.492 | 0.040 | 4.875 | |
| getPhenCenters | 1.096 | 0.088 | 12.107 | |
| getPipelines | 0.476 | 0.028 | 4.035 | |
| getProcedures | 0.508 | 0.048 | 5.388 | |
| getStrains | 0.656 | 0.044 | 7.372 | |
| getZygosities | 0.072 | 0.008 | 0.727 | |
| printAlleles | 0.484 | 0.032 | 4.484 | |
| printGenes | 0.472 | 0.020 | 4.331 | |
| printParameters | 0.480 | 0.032 | 4.746 | |
| printPhenCenters | 0.180 | 0.004 | 2.726 | |
| printPipelines | 0.424 | 0.020 | 4.036 | |
| printProcedures | 0.504 | 0.032 | 4.696 | |
| printStrains | 0.640 | 0.032 | 6.767 | |