Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-07-25 10:25:25 -0400 (Wed, 25 Jul 2018).
Package 726/1560 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IMMAN 1.0.0 Minoo Ashtiani
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: IMMAN |
Version: 1.0.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IMMAN.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IMMAN_1.0.0.tar.gz |
StartedAt: 2018-07-25 02:36:37 -0400 (Wed, 25 Jul 2018) |
EndedAt: 2018-07-25 02:46:21 -0400 (Wed, 25 Jul 2018) |
EllapsedTime: 583.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IMMAN.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IMMAN.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IMMAN_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IMMAN.Rcheck' * using R version 3.5.1 RC (2018-06-24 r74929) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'IMMAN/DESCRIPTION' ... OK * this is package 'IMMAN' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'IMMAN' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE IMMAN: no visible binding for global variable 'tem' IMMAN : <anonymous>: no visible binding for global variable 'tem' Undefined global functions or variables: tem * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed IMMAN 111.65 2.88 127 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed IMMAN 123.41 2.41 137.72 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IMMAN.Rcheck/00check.log' for details.
IMMAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IMMAN_1.0.0.tar.gz && rm -rf IMMAN.buildbin-libdir && mkdir IMMAN.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IMMAN.buildbin-libdir IMMAN_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IMMAN_1.0.0.zip && rm IMMAN_1.0.0.tar.gz IMMAN_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 14069 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 14069 100 14069 0 0 239k 0 --:--:-- --:--:-- --:--:-- 264k install for i386 * installing *source* package 'IMMAN' ... ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'IMMAN' finding HTML links ... done Celegance html FruitFly html H.sapiens html IMMAN html R.norvegicus html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'IMMAN' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'IMMAN' as IMMAN_1.0.0.zip * DONE (IMMAN) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'IMMAN' successfully unpacked and MD5 sums checked In R CMD INSTALL
IMMAN.Rcheck/tests_i386/testthat.Rout R version 3.5.1 RC (2018-06-24 r74929) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(IMMAN) > > test_check("IMMAN") trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/6239__protein_aliases_tf.tsv.gz' Content type 'application/x-gzip' length 3866324 bytes (3.7 MB) ================================================== downloaded 3.7 MB trying URL 'http://string.uzh.ch/permanent/string/10/proteins/6239__proteins.tsv.gz' Content type 'application/x-gzip' length 792419 bytes (773 KB) ================================================== downloaded 773 KB trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/7227__protein_aliases_tf.tsv.gz' Content type 'application/x-gzip' length 4062637 bytes (3.9 MB) ================================================== downloaded 3.9 MB trying URL 'http://string.uzh.ch/permanent/string/10/proteins/7227__proteins.tsv.gz' Content type 'application/x-gzip' length 648541 bytes (633 KB) ================================================== downloaded 633 KB trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/6239__protein_links.tsv.gz' Content type 'application/x-gzip' length 26272827 bytes (25.1 MB) ================================================== downloaded 25.1 MB trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/7227__protein_links.tsv.gz' Content type 'application/x-gzip' length 18188738 bytes (17.3 MB) ================================================== downloaded 17.3 MB == testthat results =========================================================== OK: 2 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 81.17 2.75 92.92 |
IMMAN.Rcheck/tests_x64/testthat.Rout R version 3.5.1 RC (2018-06-24 r74929) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(IMMAN) > > test_check("IMMAN") trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/6239__protein_aliases_tf.tsv.gz' Content type 'application/x-gzip' length 3866324 bytes (3.7 MB) ================================================== downloaded 3.7 MB trying URL 'http://string.uzh.ch/permanent/string/10/proteins/6239__proteins.tsv.gz' Content type 'application/x-gzip' length 792419 bytes (773 KB) ================================================== downloaded 773 KB trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/7227__protein_aliases_tf.tsv.gz' Content type 'application/x-gzip' length 4062637 bytes (3.9 MB) ================================================== downloaded 3.9 MB trying URL 'http://string.uzh.ch/permanent/string/10/proteins/7227__proteins.tsv.gz' Content type 'application/x-gzip' length 648541 bytes (633 KB) ================================================== downloaded 633 KB trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/6239__protein_links.tsv.gz' Content type 'application/x-gzip' length 26272827 bytes (25.1 MB) ================================================== downloaded 25.1 MB trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/7227__protein_links.tsv.gz' Content type 'application/x-gzip' length 18188738 bytes (17.3 MB) ================================================== downloaded 17.3 MB == testthat results =========================================================== OK: 2 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 94.21 2.81 105.64 |
IMMAN.Rcheck/examples_i386/IMMAN-Ex.timings
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IMMAN.Rcheck/examples_x64/IMMAN-Ex.timings
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