Jason Ross
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/Harman |
| Branch: RELEASE_3_7 |
| Last Commit: 2a8aebf |
| Last Changed Date: 2018-04-30 10:35:42 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:15 -0400 (Wed, 17 Oct 2018).
| Package 672/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Harman 1.8.0 Jason Ross
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Harman |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Harman_1.8.0.tar.gz && rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harman.buildbin-libdir Harman_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Harman_1.8.0.zip && rm Harman_1.8.0.tar.gz Harman_1.8.0.zip |
| StartedAt: 2018-10-16 18:36:01 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:36:53 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 52.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Harman_1.8.0.tar.gz && rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harman.buildbin-libdir Harman_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Harman_1.8.0.zip && rm Harman_1.8.0.tar.gz Harman_1.8.0.zip
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install for i386
* installing *source* package 'Harman' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -IC:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include -std=c++0x -O2 -Wall -mtune=generic -c Harman.cpp -o Harman.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Harman.dll tmp.def Harman.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Harman.buildbin-libdir/Harman/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Harman'
finding HTML links ... done
arrowPlot html
callHarman html
detachHarman html
harman html
harmanScores html
harmanresults html
pcaPlot html
plot.harmanresults html
prcompPlot html
print.summary.harmanresults html
reconstructData html
shiftBetas html
summary.harmanresults html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Harman' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -IC:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include -std=c++0x -O2 -Wall -mtune=generic -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:0:
CSelectRandom.h: In instantiation of 'std::vector<unsigned int>* CSelectRandom<T>::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long long unsigned int]':
Harman.cpp:1764:117: required from here
CSelectRandom.h:943:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (currval < howManyIN)
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Harman.dll tmp.def Harman.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Harman.buildbin-libdir/Harman/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Harman' as Harman_1.8.0.zip
* DONE (Harman)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'Harman' successfully unpacked and MD5 sums checked
In R CMD INSTALL