Xiuwen Zheng
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/HIBAG |
| Branch: RELEASE_3_7 |
| Last Commit: 0dbfdc0 |
| Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:58 -0400 (Wed, 17 Oct 2018).
| Package 682/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HIBAG 1.16.0 Xiuwen Zheng
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: HIBAG |
| Version: 1.16.0 |
| Command: rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HIBAG.buildbin-libdir HIBAG_1.16.0.tar.gz |
| StartedAt: 2018-10-17 06:30:29 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 06:33:21 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 172.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: HIBAG_1.16.0.zip |
| PackageFileSize: 1.662 MiB |
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### Running command:
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### rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HIBAG.buildbin-libdir HIBAG_1.16.0.tar.gz
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install for i386
* installing *source* package 'HIBAG' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c HIBAG.cpp -o HIBAG.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c LibHLA.cpp -o LibHLA.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o HIBAG.dll tmp.def HIBAG.o LibHLA.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/HIBAG.buildbin-libdir/HIBAG/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HIBAG'
finding HTML links ... done
HIBAG-package html
HLA_Type_Table html
HapMap_CEU_Geno html
hlaAASeqClass html
hlaAllele html
hlaAlleleClass html
hlaAlleleDigit html
hlaAlleleSubset html
hlaAssocTest html
hlaAttrBagClass html
hlaAttrBagObj html
hlaAttrBagging html
hlaBED2Geno html
hlaCheckAllele html
hlaCheckSNPs html
hlaClose html
hlaCombineAllele html
hlaCombineModelObj html
hlaCompareAllele html
hlaConvSequence html
hlaErrMsg html
hlaFlankingSNP html
hlaGDS2Geno html
hlaGeno2PED html
hlaGenoAFreq html
hlaGenoCombine html
hlaGenoLD html
hlaGenoMFreq html
hlaGenoMRate html
hlaGenoMRate_Samp html
hlaGenoSubset html
hlaGenoSwitchStrand html
hlaLDMatrix html
hlaLociInfo html
hlaMakeSNPGeno html
hlaModelFiles html
hlaModelFromObj html
hlaOutOfBag html
hlaParallelAttrBagging html
hlaPredMerge html
hlaPublish html
hlaReport html
hlaReportPlot html
hlaSNPGenoClass html
hlaSNPID html
hlaSampleAllele html
hlaSplitAllele html
hlaSubModelObj html
hlaUniqueAllele html
plot.hlaAttrBagObj html
predict.hlaAttrBagClass html
print.hlaAttrBagClass html
summary.hlaAlleleClass html
summary.hlaSNPGenoClass html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'HIBAG' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c HIBAG.cpp -o HIBAG.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c LibHLA.cpp -o LibHLA.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o HIBAG.dll tmp.def HIBAG.o LibHLA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/HIBAG.buildbin-libdir/HIBAG/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HIBAG' as HIBAG_1.16.0.zip
* DONE (HIBAG)
In R CMD INSTALL
In R CMD INSTALL