Peter Hickey
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/GenomicTuples |
| Branch: RELEASE_3_7 |
| Last Commit: 7732fba |
| Last Changed Date: 2018-05-27 16:24:52 -0400 (Sun, 27 May 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:27 -0400 (Wed, 17 Oct 2018).
| Package 599/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicTuples 1.14.1 Peter Hickey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GenomicTuples |
| Version: 1.14.1 |
| Command: rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicTuples.buildbin-libdir GenomicTuples_1.14.1.tar.gz |
| StartedAt: 2018-10-17 06:23:16 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 06:24:10 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 54.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GenomicTuples_1.14.1.zip |
| PackageFileSize: 1.309 MiB |
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### Running command:
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### rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicTuples.buildbin-libdir GenomicTuples_1.14.1.tar.gz
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install for i386
* installing *source* package 'GenomicTuples' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c IPD.cpp -o IPD.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c allTuplesSorted.cpp -o allTuplesSorted.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pcompareGTuples.cpp -o pcompareGTuples.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GenomicTuples.buildbin-libdir/GenomicTuples/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicTuples'
finding HTML links ... done
GTuples-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:75: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:267: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:278: file link 'DataTable' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:291: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:300: file link 'seqlevels' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:513: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:515: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:533: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-class.Rd:551: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
GTuples-comparison html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuples-comparison.Rd:165: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
GTuplesList-class html
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:100: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:101: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:101: file link 'CharacterList' in package 'IRanges' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:126: file link 'CharacterList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:129: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:130: file link 'CharacterList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:136: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/GTuplesList-class.Rd:252: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
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GenomicTuples-package html
findOverlaps-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/findOverlaps-methods.Rd:27: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
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illdefined-methods html
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intra-tuple-methods html
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nearest-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:147: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:150: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:165: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:166: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:167: file link 'IPosRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/nearest-methods.Rd:168: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
tuples-squeezers html
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSYFBF3/R.INSTALL147c370543c1/GenomicTuples/man/tuples-squeezers.Rd:14: file link 'grglist' in package 'GenomicRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GenomicTuples' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c IPD.cpp -o IPD.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c allTuplesSorted.cpp -o allTuplesSorted.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pcompareGTuples.cpp -o pcompareGTuples.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GenomicTuples.buildbin-libdir/GenomicTuples/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicTuples' as GenomicTuples_1.14.1.zip
* DONE (GenomicTuples)
In R CMD INSTALL
In R CMD INSTALL