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INSTALL report for GeneBreak on tokay2

This page was generated on 2018-10-17 08:41:16 -0400 (Wed, 17 Oct 2018).

Package 561/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneBreak 1.10.0
Evert van den Broek
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GeneBreak
Branch: RELEASE_3_7
Last Commit: 1a55884
Last Changed Date: 2018-04-30 10:35:38 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneBreak
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GeneBreak_1.10.0.tar.gz && rm -rf GeneBreak.buildbin-libdir && mkdir GeneBreak.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneBreak.buildbin-libdir GeneBreak_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GeneBreak_1.10.0.zip && rm GeneBreak_1.10.0.tar.gz GeneBreak_1.10.0.zip
StartedAt: 2018-10-16 19:43:40 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:44:40 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 59.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GeneBreak_1.10.0.tar.gz && rm -rf GeneBreak.buildbin-libdir && mkdir GeneBreak.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneBreak.buildbin-libdir GeneBreak_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GeneBreak_1.10.0.zip && rm GeneBreak_1.10.0.tar.gz GeneBreak_1.10.0.zip
###
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install for i386

* installing *source* package 'GeneBreak' ...
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'segmentData' in package 'GeneBreak'
** help
*** installing help indices
  converting help for package 'GeneBreak'
    finding HTML links ... done
    CopyNumberBreakPointGenes-class         html  
    CopyNumberBreakPoints-class             html  
    GeneBreak                               html  
    accessOptions-CopyNumberBreakPoints-method
                                            html  
    addGeneAnnotation-CopyNumberBreakPoints-method
                                            html  
    bpFilter-CopyNumberBreakPoints-method   html  
    bpGenes-CopyNumberBreakPointGenes-method
                                            html  
    bpPlot-CopyNumberBreakPoints-method     html  
    bpStats-CopyNumberBreakPoints-method    html  
    breakpointData-CopyNumberBreakPoints-method
                                            html  
    breakpointsPerGene-CopyNumberBreakPointGenes-method
                                            html  
    callData-CopyNumberBreakPoints-method   html  
    copynumber.data.chr18                   html  
    copynumber.data.chr20                   html  
    copynumber.data.chr21                   html  
    ens.gene.ann.hg18                       html  
    ens.gene.ann.hg19                       html  
    ens.gene.ann.hg38                       html  
    featureChromosomes-CopyNumberBreakPoints-method
                                            html  
    featureInfo-CopyNumberBreakPoints-method
                                            html  
    featuresPerGene-CopyNumberBreakPointGenes-method
                                            html  
    geneChromosomes-CopyNumberBreakPointGenes-method
                                            html  
    geneInfo-CopyNumberBreakPointGenes-method
                                            html  
    getBreakpoints                          html  
    namesFeatures-CopyNumberBreakPoints-method
                                            html  
    recurrentGenes-CopyNumberBreakPointGenes-method
                                            html  
    sampleNames-CopyNumberBreakPoints-method
                                            html  
    segmentData-CopyNumberBreakPoints-method
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GeneBreak' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneBreak' as GeneBreak_1.10.0.zip
* DONE (GeneBreak)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GeneBreak' successfully unpacked and MD5 sums checked
In R CMD INSTALL